Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01873 ATGAAACAAGAGTTCTCGAGTATGATTTCGAAAGCCAAAACGAATGCAGTTGGAGAAACTTTAGATTCAAGCTGCATCACTTGTCCACTCCCTATTAATGGATGTAGTAGACAAGGAAGGAGTTTAACCTCGAAATTCAAAGGTGTTGTGCCTCAGCAGAATGGCCACTGGGGTGCTCAAATTTACGCTAATCACCAGCGTATTTGGCTTGGTACATTCAAGTCTGAAAATGAGGCAGCCATGGCATATGATAGTGCTGCTATCAGAATCAGGAGTGGAGATTGTCATAGAAACTTTCCTTGGACAAAAGTCACTATTGAAGAGCCTAACTTTCAGAAACTTTACACTACAGAAACTTTGCTTAATATGATAAAGGACGGTTCTTACAGAACTAAATTTTCTGAGTATTTAAGGGATCGTTCTGAAAGCACACAAACGTCGGCCAGTCCCTCCACAGAAAAGGCGCATAACAATGGAGGGACATCTATTAAGCAACTTTTTCAAAAGGAGCTAACACCTAGCGATGTTGGTAAGTTGAACAGATTGGTTATACCAAAGAAGTACGCTGTTAAGTACTTCCCTCGAATATCAGCTAGTACAACAGAAAATGTGGAACACGTTGATGATGATCGCGACTTGCAGCTATTATTTTTTGACAAAATGATGAGACAATGGAAATTTCGCTACTGTTACTGGAAAAGCAGCCAGAGCTATGTTTTTACGCGTGGTTGGAATCGCTTTGTGAAGGAAAAACAACTGAAAGCTAACGACACAATAGCTTTCTACTTATGTGAAGCAGCAAAGTCAAGTGATTCTAAAACTACATTTTGTGTGGTAGATGTTAAAAACCGTGACAACAGTGGTGGCCTGGTTGAGAATGAAACCACATGTAGCGAATTGCAGCTCAATTTGAGGCATGGAGAAGTTGAGGAATCGGTCTCGCCTAAGCACATAGACGATGAACTAAAAGATGAACGTGAAGTTAAGGGCTTCAAACTGTTTGGAGTGCATATTAAGTGA 1020 40.49 MKQEFSSMISKAKTNAVGETLDSSCITCPLPINGCSRQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKVTIEEPNFQKLYTTETLLNMIKDGSYRTKFSEYLRDRSESTQTSASPSTEKAHNNGGTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPRISASTTENVEHVDDDRDLQLLFFDKMMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAAKSSDSKTTFCVVDVKNRDNSGGLVENETTCSELQLNLRHGEVEESVSPKHIDDELKDEREVKGFKLFGVHIK* 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15745012 15746031 + CsaV3_1G028810.1 Csa01g01873 516370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01873 339 SUPERFAMILY DNA-binding pseudobarrel domain 166 266 IPR015300 -
Csa01g01873 339 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677
Csa01g01873 339 PANTHER DNA-BINDING PROTEIN RAV1 1 338 - -
Csa01g01873 339 SMART rav1_2 45 106 IPR001471 GO:0003700|GO:0006355
Csa01g01873 339 MobiDBLite consensus disorder prediction 140 159 - -
Csa01g01873 339 ProSiteProfiles B3 DNA-binding domain profile. 167 282 IPR003340 GO:0003677
Csa01g01873 339 ProSiteProfiles AP2/ERF domain profile. 45 100 IPR001471 GO:0003700|GO:0006355
Csa01g01873 339 CDD B3_DNA 166 278 IPR003340 GO:0003677
Csa01g01873 339 Gene3D - 162 288 IPR015300 -
Csa01g01873 339 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 338 IPR044800 GO:0003700
Csa01g01873 339 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Csa01g01873 339 Pfam AP2 domain 44 91 IPR001471 GO:0003700|GO:0006355
Csa01g01873 339 Pfam B3 DNA binding domain 167 266 IPR003340 GO:0003677
Csa01g01873 339 SMART B3_2 167 282 IPR003340 GO:0003677
Csa01g01873 339 Gene3D AP2/ERF domain 44 101 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01873 Csa-Chr1:15745012 Csa01g03118 Csa-Chr1:27284528 3.97E-107 dispersed
Csa01g01873 Csa-Chr1:15745012 Csa05g00141 Csa-Chr5:765460 3.56E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30743 PF02362 B3 1.10E-23 CL0405 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01873 K09287 - csv:101212246 690.263