Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01873 ATGAAACAAGAGTTCTCGAGTATGATTTCGAAAGCCAAAACGAATGCAGTTGGAGAAACTTTAGATTCAAGCTGCATCACTTGTCCACTCCCTATTAATGGATGTAGTAGACAAGGAAGGAGTTTAACCTCGAAATTCAAAGGTGTTGTGCCTCAGCAGAATGGCCACTGGGGTGCTCAAATTTACGCTAATCACCAGCGTATTTGGCTTGGTACATTCAAGTCTGAAAATGAGGCAGCCATGGCATATGATAGTGCTGCTATCAGAATCAGGAGTGGAGATTGTCATAGAAACTTTCCTTGGACAAAAGTCACTATTGAAGAGCCTAACTTTCAGAAACTTTACACTACAGAAACTTTGCTTAATATGATAAAGGACGGTTCTTACAGAACTAAATTTTCTGAGTATTTAAGGGATCGTTCTGAAAGCACACAAACGTCGGCCAGTCCCTCCACAGAAAAGGCGCATAACAATGGAGGGACATCTATTAAGCAACTTTTTCAAAAGGAGCTAACACCTAGCGATGTTGGTAAGTTGAACAGATTGGTTATACCAAAGAAGTACGCTGTTAAGTACTTCCCTCGAATATCAGCTAGTACAACAGAAAATGTGGAACACGTTGATGATGATCGCGACTTGCAGCTATTATTTTTTGACAAAATGATGAGACAATGGAAATTTCGCTACTGTTACTGGAAAAGCAGCCAGAGCTATGTTTTTACGCGTGGTTGGAATCGCTTTGTGAAGGAAAAACAACTGAAAGCTAACGACACAATAGCTTTCTACTTATGTGAAGCAGCAAAGTCAAGTGATTCTAAAACTACATTTTGTGTGGTAGATGTTAAAAACCGTGACAACAGTGGTGGCCTGGTTGAGAATGAAACCACATGTAGCGAATTGCAGCTCAATTTGAGGCATGGAGAAGTTGAGGAATCGGTCTCGCCTAAGCACATAGACGATGAACTAAAAGATGAACGTGAAGTTAAGGGCTTCAAACTGTTTGGAGTGCATATTAAGTGA 1020 40.49 MKQEFSSMISKAKTNAVGETLDSSCITCPLPINGCSRQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKVTIEEPNFQKLYTTETLLNMIKDGSYRTKFSEYLRDRSESTQTSASPSTEKAHNNGGTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPRISASTTENVEHVDDDRDLQLLFFDKMMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAAKSSDSKTTFCVVDVKNRDNSGGLVENETTCSELQLNLRHGEVEESVSPKHIDDELKDEREVKGFKLFGVHIK* 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15745012 15746031 + CsaV3_1G028810.1 Csa01g01873 516370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01873 339 SUPERFAMILY DNA-binding pseudobarrel domain 166 266 IPR015300 -
Csa01g01873 339 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677
Csa01g01873 339 PANTHER DNA-BINDING PROTEIN RAV1 1 338 - -
Csa01g01873 339 SMART rav1_2 45 106 IPR001471 GO:0003700|GO:0006355
Csa01g01873 339 MobiDBLite consensus disorder prediction 140 159 - -
Csa01g01873 339 ProSiteProfiles B3 DNA-binding domain profile. 167 282 IPR003340 GO:0003677
Csa01g01873 339 ProSiteProfiles AP2/ERF domain profile. 45 100 IPR001471 GO:0003700|GO:0006355
Csa01g01873 339 CDD B3_DNA 166 278 IPR003340 GO:0003677
Csa01g01873 339 Gene3D - 162 288 IPR015300 -
Csa01g01873 339 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 338 IPR044800 GO:0003700
Csa01g01873 339 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Csa01g01873 339 Pfam AP2 domain 44 91 IPR001471 GO:0003700|GO:0006355
Csa01g01873 339 Pfam B3 DNA binding domain 167 266 IPR003340 GO:0003677
Csa01g01873 339 SMART B3_2 167 282 IPR003340 GO:0003677
Csa01g01873 339 Gene3D AP2/ERF domain 44 101 IPR036955 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01873 K09287 RAV; RAV-like factor - csv:101212246 690.263
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01873 Csa-Chr1:15745012 Csa01g03118 Csa-Chr1:27284528 3.97E-107 dispersed
Csa01g01873 Csa-Chr1:15745012 Csa05g00141 Csa-Chr5:765460 3.56E-27 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g03451 . 1 166 RAV Transcription Factor Family AT2G36080 59.3 5.3e-48 187.6
Csa06g00841 . 15 146 RAV Transcription Factor Family AT2G36080 62.2 5.7e-42 167.5
Csa05g00141 . 50 161 RAV Transcription Factor Family AT2G36080 68.7 7.0e-40 160.6
Csa04g00592 . 62 170 RAV Transcription Factor Family AT2G36080 70.8 1.2e-39 159.8
Csa05g02582 . 173 302 RAV Transcription Factor Family AT2G36080 58.8 2.9e-38 155.2
Csa05g00141 . 49 167 RAV Transcription Factor Family AT2G46870 85.8 3.0e-57 219.2
Csa06g00841 . 8 127 RAV Transcription Factor Family AT2G46870 78.3 1.4e-51 200.3
Csa05g02582 . 179 287 RAV Transcription Factor Family AT2G46870 69.6 2.8e-39 159.5
Csa03g03451 . 36 158 RAV Transcription Factor Family AT2G46870 61.9 2.6e-37 152.9
Csa03g03451 . 33 196 RAV Transcription Factor Family AT3G11580 56.7 4.8e-44 174.9
Csa05g00141 . 50 163 RAV Transcription Factor Family AT3G11580 60.8 2.7e-39 159.1
Csa06g00841 . 15 134 RAV Transcription Factor Family AT3G11580 59.1 6.0e-39 157.9
Csa04g00592 . 62 170 RAV Transcription Factor Family AT3G11580 64.5 7.8e-39 157.5
Csa05g00141 . 51 169 RAV Transcription Factor Family AT3G61970 80.3 2.5e-53 206.1
Csa06g00841 . 16 127 RAV Transcription Factor Family AT3G61970 80.2 1.2e-47 187.2
Csa05g02582 . 179 287 RAV Transcription Factor Family AT3G61970 70.0 1.6e-39 160.2
Csa05g00141 . 53 168 RAV Transcription Factor Family AT4G01500 68.3 2.9e-42 169.5
Csa06g00841 . 9 127 RAV Transcription Factor Family AT4G01500 65.6 4.2e-41 165.6
Csa04g00592 . 63 195 RAV Transcription Factor Family AT4G01500 56.0 6.7e-39 158.3
Csa03g03451 . 41 241 RAV Transcription Factor Family AT5G06250 54.9 3.0e-50 195.7
Csa04g00592 . 63 170 RAV Transcription Factor Family AT5G06250 69.7 4.4e-41 165.2
Csa05g00141 . 53 161 RAV Transcription Factor Family AT5G06250 64.7 1.8e-39 159.8
Csa06g00841 . 18 127 RAV Transcription Factor Family AT5G06250 65.0 1.8e-39 159.8
Csa05g02582 . 179 287 RAV Transcription Factor Family AT5G06250 62.4 6.5e-37 151.4
Csa01g01873 . 45 339 RAV Transcription Factor Family AT1G50680 54.0 1.9e-86 316.2
Csa01g03118 . 52 355 RAV Transcription Factor Family AT1G50680 52.5 2.3e-79 292.7
Csa01g01873 . 41 340 RAV Transcription Factor Family AT1G51120 51.9 1.6e-83 306.6
Csa01g03118 . 52 266 RAV Transcription Factor Family AT1G51120 64.5 2.4e-79 292.7
Csa05g02582 . 22 343 RAV Transcription Factor Family AT1G13260 65.4 3.2e-105 378.6
Csa05g01482 . 1 289 RAV Transcription Factor Family AT1G13260 61.3 1.4e-92 336.7
Csa05g00141 . 54 161 RAV Transcription Factor Family AT1G13260 71.6 7.6e-38 154.8
Csa06g00841 . 19 127 RAV Transcription Factor Family AT1G13260 69.1 3.8e-37 152.5
Csa03g03451 . 41 159 RAV Transcription Factor Family AT1G13260 65.5 4.9e-37 152.1
Csa05g02582 . 15 341 RAV Transcription Factor Family AT3G25730 62.6 2.2e-98 355.9
Csa05g01482 . 34 289 RAV Transcription Factor Family AT3G25730 65.6 1.7e-87 319.7
Csa05g02582 . 1 345 RAV Transcription Factor Family AT1G68840 61.3 1.1e-111 400.2
Csa05g01482 . 1 292 RAV Transcription Factor Family AT1G68840 59.1 2.7e-91 332.4
Csa05g00141 . 53 161 RAV Transcription Factor Family AT1G68840 70.3 2.0e-38 156.8
Csa03g03451 . 41 175 RAV Transcription Factor Family AT1G68840 61.8 2.7e-38 156.4
Csa06g00841 . 18 134 RAV Transcription Factor Family AT1G68840 64.7 4.6e-38 155.6
Csa05g02582 . 15 341 RAV Transcription Factor Family AT3G25730 62.6 2.2e-98 355.9
Csa05g01482 . 34 289 RAV Transcription Factor Family AT3G25730 65.6 1.7e-87 319.7
Csa01g01873 . 41 340 RAV Transcription Factor Family AT1G51120 51.9 1.6e-83 306.6
Csa01g03118 . 52 266 RAV Transcription Factor Family AT1G51120 64.5 2.4e-79 292.7
Csa03g03451 . 33 196 RAV Transcription Factor Family AT3G11580 56.7 4.8e-44 174.9
Csa05g00141 . 50 163 RAV Transcription Factor Family AT3G11580 60.8 2.7e-39 159.1
Csa06g00841 . 15 134 RAV Transcription Factor Family AT3G11580 59.1 6.0e-39 157.9
Csa04g00592 . 62 170 RAV Transcription Factor Family AT3G11580 64.5 7.8e-39 157.5
Csa05g00141 . 53 168 RAV Transcription Factor Family AT4G01500 68.3 2.9e-42 169.5
Csa06g00841 . 9 127 RAV Transcription Factor Family AT4G01500 65.6 4.2e-41 165.6
Csa04g00592 . 63 195 RAV Transcription Factor Family AT4G01500 56.0 6.7e-39 158.3
Csa03g03451 . 1 166 RAV Transcription Factor Family AT2G36080 59.3 5.3e-48 187.6
Csa06g00841 . 15 146 RAV Transcription Factor Family AT2G36080 62.2 5.7e-42 167.5
Csa05g00141 . 50 161 RAV Transcription Factor Family AT2G36080 68.7 7.0e-40 160.6
Csa04g00592 . 62 170 RAV Transcription Factor Family AT2G36080 70.8 1.2e-39 159.8
Csa05g02582 . 173 302 RAV Transcription Factor Family AT2G36080 58.8 2.9e-38 155.2
Csa03g03451 . 41 241 RAV Transcription Factor Family AT5G06250 54.9 3.0e-50 195.7
Csa04g00592 . 63 170 RAV Transcription Factor Family AT5G06250 69.7 4.4e-41 165.2
Csa05g00141 . 53 161 RAV Transcription Factor Family AT5G06250 64.7 1.8e-39 159.8
Csa06g00841 . 18 127 RAV Transcription Factor Family AT5G06250 65.0 1.8e-39 159.8
Csa05g02582 . 179 287 RAV Transcription Factor Family AT5G06250 62.4 6.5e-37 151.4
Csa05g00141 . 49 167 RAV Transcription Factor Family AT2G46870 85.8 3.0e-57 219.2
Csa06g00841 . 8 127 RAV Transcription Factor Family AT2G46870 78.3 1.4e-51 200.3
Csa05g02582 . 179 287 RAV Transcription Factor Family AT2G46870 69.6 2.8e-39 159.5
Csa03g03451 . 36 158 RAV Transcription Factor Family AT2G46870 61.9 2.6e-37 152.9
Csa01g01873 . 45 339 RAV Transcription Factor Family AT1G50680 54.0 1.9e-86 316.2
Csa01g03118 . 52 355 RAV Transcription Factor Family AT1G50680 52.5 2.3e-79 292.7
Csa05g00141 . 51 169 RAV Transcription Factor Family AT3G61970 80.3 2.5e-53 206.1
Csa06g00841 . 16 127 RAV Transcription Factor Family AT3G61970 80.2 1.2e-47 187.2
Csa05g02582 . 179 287 RAV Transcription Factor Family AT3G61970 70.0 1.6e-39 160.2
Csa05g02582 . 22 343 RAV Transcription Factor Family AT1G13260 65.4 3.2e-105 378.6
Csa05g01482 . 1 289 RAV Transcription Factor Family AT1G13260 61.3 1.4e-92 336.7
Csa05g00141 . 54 161 RAV Transcription Factor Family AT1G13260 71.6 7.6e-38 154.8
Csa06g00841 . 19 127 RAV Transcription Factor Family AT1G13260 69.1 3.8e-37 152.5
Csa03g03451 . 41 159 RAV Transcription Factor Family AT1G13260 65.5 4.9e-37 152.1
Csa05g02582 . 1 345 RAV Transcription Factor Family AT1G68840 61.3 1.1e-111 400.2
Csa05g01482 . 1 292 RAV Transcription Factor Family AT1G68840 59.1 2.7e-91 332.4
Csa05g00141 . 53 161 RAV Transcription Factor Family AT1G68840 70.3 2.0e-38 156.8
Csa03g03451 . 41 175 RAV Transcription Factor Family AT1G68840 61.8 2.7e-38 156.4
Csa06g00841 . 18 134 RAV Transcription Factor Family AT1G68840 64.7 4.6e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002261 1 6 1 2 2 2 3 2 1 2 2 2 3 2 1 3 2 2 3 2 2 2 2 2 2 2 2 3 1 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30743 PF02362 B3 1.10E-23 CL0405 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g01873 Csa_Chr01 FPKM 7.210265 6.382149 0.965919 0.964685 0.248314 0.0 0.0 36.904598 35.638153 37.125496