Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01874 ATGGCGGAAAAGGATAGAGATGGTAGTTCTGGTGTGCTCCATGGGAAGTATGAGTTAGGTCGGCTTCTAGGGCATGGAACTTTCGCGAAGGTTTACCATGCCCGGAACTTGCAGTCTGGGACGAGTATGGCGATGAAGGTCGTTGGGAAGGAGAAGGTCATAAAAGTAGGGATGATGGAGCAGATCAAGAGGGAGATCTCTGTGATGAAGATGGTGAAACATCCGAATATCGTTGAGCTTCATGAAGTTATGGCGAGCAAATCGAAGATTTATTTCGCTATGGAGCTTGTTCGAGGTGGAGAATTGTTCTCCAAAATTTCCAAAGGTCGATTGAGAGAAGATGTCGCTAGGGTTTACTTTCAGCAGCTAATTTCCGCGATCGATTTCTGTCACAGTCGTGGAGTATACCATCGGGATCTCAAACCGGAGAATCTTCTTCTCGACGACGACGGAAACCTTAAGGTAACTGATTTTGGACTAAGCGCATTTTCCGAGCACTTGAAACAGGATGGATTATTGCACACAACTTGTGGAACACCGGCGTACGTTGCCCCGGAAGTTATCGGGAAGAAAGGATACAACGGCGCCAAAGCCGATCTGTGGTCTTGTGGAGTCATCCTTTACGTTCTCCTTGCCGGATTTCTTCCATTTCAAGACGACAATATTGTATCCATGTACAGGAAGATTTACAGAGGAGACTTCAAGTGTCCGCCGTGGTTCTCACCGGAAGCCCGACGACTAGTCACCAAACTCCTCGATCCAAATCCGAACACCAGAATCCCAACTTCGAAGATAATGGAATCGTCCTGGTTCAGGAAATCTATACCAAAAACTGTGGTTACAAAAGAGGAACAGGAATTCATCGAGAGCAACGAGAAATTAAAGCAATCCGAAACTTTAAATGCCTTCCATATAATTTCTTTATCAGAAGGGTTCGATTTGTCGCCGTTGTTCGAGGAGAAAAAGAGGGAAGAAAAAGAGGAGCTGAGGTTTGCAACGACGAGGCCGGCAAGCAGTGTTATATCGAAGCTGGAGGAGGTGGCCAAGGCAGGGAAATTCAGCGTCAAAAAGAGTGAATCAAGGGTCAGATTGCAGGGTCAGGAGTGTGGAAGAAAAGGGAAACTGTCAGTGGCGGCGGAGATCTTCGCGGTGACGCCGTCGTTTCTGGTGGTGGAGGTGAAGAAAGATCACGGTGACACACTTGAATACAATCAGTTCTGCAGCAAAGAGCTTCGGCCGGCGCTGAAAGATATCGTGTGGACATCACCGACGGAAAATTCCATGCCGGCTTGA 1293 47.49 MAEKDRDGSSGVLHGKYELGRLLGHGTFAKVYHARNLQSGTSMAMKVVGKEKVIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKISKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDDDGNLKVTDFGLSAFSEHLKQDGLLHTTCGTPAYVAPEVIGKKGYNGAKADLWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSPEARRLVTKLLDPNPNTRIPTSKIMESSWFRKSIPKTVVTKEEQEFIESNEKLKQSETLNAFHIISLSEGFDLSPLFEEKKREEKEELRFATTRPASSVISKLEEVAKAGKFSVKKSESRVRLQGQECGRKGKLSVAAEIFAVTPSFLVVEVKKDHGDTLEYNQFCSKELRPALKDIVWTSPTENSMPA* 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15751776 15753068 - CsaV3_1G028820.1 Csa01g01874 516371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01874 430 PANTHER - 8 428 - -
Csa01g01874 430 Gene3D Phosphorylase Kinase; domain 1 14 98 - -
Csa01g01874 430 Pfam NAF domain 298 357 IPR004041 GO:0007165
Csa01g01874 430 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01874 430 CDD STKc_SnRK3 16 270 - -
Csa01g01874 430 SUPERFAMILY Protein kinase-like (PK-like) 13 291 IPR011009 -
Csa01g01874 430 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 8 428 - -
Csa01g01874 430 ProSiteProfiles NAF domain profile. 295 319 IPR018451 GO:0007165
Csa01g01874 430 Gene3D Kinase associated domain 1, KA1 295 421 - -
Csa01g01874 430 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01874 430 CDD CIPK_C 301 416 - -
Csa01g01874 430 Gene3D Transferase(Phosphotransferase) domain 1 99 277 - -
Csa01g01874 430 SMART serkin_6 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01874 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Csa01g01874 430 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01874 Csa-Chr1:15751776 Csa01g02318 Csa-Chr1:20282952 0 dispersed
Csa01g02020 Csa-Chr1:17063868 Csa01g01874 Csa-Chr1:15751776 4.97E-99 transposed
Csa02g00268 Csa-Chr2:1847249 Csa01g01874 Csa-Chr1:15751776 0 transposed
Csa01g01874 Csa-Chr1:15751776 Csa04g02637 Csa-Chr4:25743103 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77809 PF00069 Pkinase 1.20E-71 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01874 - K07198 csv:101211847 849.351