Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01880 ATGCAGAGTCAGATGGGTGATATCTTATCTAAGTATGATATGACCATAATGGACTACCCTCAGCAGTACGAGGGCTGCCCAGTTCTGACGATGGAAGTGGTTCACCATTTTTTAAGATCATGTGAGAGTTGGCTTTCCCTTGGGCAGAATAATGTTTTGCTAATGCATTGTGAACGTGGTGGTTGGCCAGTTTTAGCTTTCATGCTTTCAGCTCTCTTGATTTATAGAAAACAATATAGTGGCGAACAAAGAACATTGGACATGGTTTATAGGCAGGCACCTCGTGAGCTTTTGCATTTTTTGTCTCCTATGAATCCGATTCCATCTCAATTAAGGTATCTGCAATATGTTGCGAGGAGGAATGTAGCCTTAGAATGGCCTCCTATGGACAGAGCTCTCACTTTGGATTGTATCATTTTGAGGTTTATTCCAAATTTTGATGGGGAGGGTGGTTGCCGTCCAATATTTCGAATATATGGACAAGATCCTCTGCTGGTCAGTGATCGAACTCCTAAAGTTCTTTATTCAACTCCAAAAAGAAGCAAAAATGTCCGAGCTTTCAAACAGGCAGAGTCTGAACTGGTTAAGATTGATGTTAATTGTCATATTCAAGGTGATGTTGTTCTTGAGTGCATCACCTTGCATGACGACATGGAATTTGAAGAGATGATGTTCAGAGCAATGTTTAATACTGCTTTTATTCGCTCTAATATTTTAATTCTCAACCGTGAAGAGATTGATACATTGTGGAATGCTAAAGATAAATTTCCAAAAGACTTCCGAGCAGAGATTCTTTTCTCTGAGATGGATGCTGGAACTCGTACTGTTGCAAATGATGTACTTTGCATTGAGGAAGAAGGTCTCCCCATGGAAGCATTTGCTAAAGTGCAAGAGATCTTTAGTCATGTGGATTGGTTAGATCCCAAGGCAGATGTTGCCCTTAGTGTGCTCCATCAGATGAATGCCTTAAACATAGCCCAAGAGAAGCCAGACAATAATTCTCTTTGGAGTACGCAAGTTAGTTCTTTACTTCAGAGTGCAAGTCCCAGAAAACTTCCACAGAAGTTCACATTGGAGAACAGAAGTAAATTCCTAGAGAAGGAAGGATCTAGTCCAACCTCTAAATTTTCTCCGGATGCTGCTAAAACCGAACAAAACAATGAATCTAATTCAGTATTCCAACGGGTGCCTCAATCTCCAGACCCTTTTCCACTCACCTTCGACATGTTGCAAGATTCCCCAATCTCAGATAGAAGTGATAGGACCTCATACAGTGCTTCGGTTGGAAGCCACTCATTTATTGATTCTGAAGGAGAAATAGATGTTTCTCATCTGAAAACTGCATCTTCATCTTTTCGGGATGCAACATTGGATGTTTCTCTAGCACCTGAATCTCCTCAGACTAAAAATTTATATACAGAGACAACCATACCACCACCTCCTCCTCTCCCACAACTTTCCACTGATATTTATGCTGCAAATTCTCTACCTCCTCCTCACTCTACTTCAACTGAATCACTACTTCAGTCTAATAACTTTTCAACTCTACAACCAAATAGAGCTTCACTCACTGAGGAAATAGAAATCTATTCAAAGGATCAAAATCAGTTATCAGCCATCATCCCTCCCGTGTCTGTAACCTCTACAATTAGTTCCTCAGTACAGTCTTCTCCACCACCTCCTCCACCACCTCCTTCAACACCTCCTTTGAAGGATACCATAGCTGTTAGAGTTAAAGCTTCTTTGACAACACCCTCTTTTCCTTCTACATTAGCTTCTCATCCTACAATTGCATCCTCCGTTCCTCAACCACCACCTCCTCCTCCTCCTTCCACATCCACTGTAACTCATAAAATTTCATCTCCAATCCCTTCACCTCCACCACCACCGCCTACTCCTTCTCCTCCTCCTCCTCCTCCAATAGTCATTACAAATCCTAAAATCTCCTCTCCAGTGCCTCCACCACCACCTCCTCTCCCTATGACTTCCAAACAGGTTGAAAGTACAACAACATCCCCATCTATTCCTCCTCCACCACCACCACCTATTCCTATGACATCCAGGCAGGTTGGAAGTACTTCAACATCTTCGCCTGTTCCTCCACCAGCACCACCTCTTCCATCTAGACAGGTTGGAAGTACTTCAACATCTTCGCCTGTTCCTCCACCACCACCACCTCTTCCATCCAGACAGGTTGGAAGTACTTCAACATCTTCACATGTTCCCCCTCCTCCACCACCGCCTGCTTCCACCAAAGGCTCCCCTTCATCTGTTCCTTCTGCTCCCCCTCCTCCTACCCTTTCTGGGAGAGGGCCTTCAAAATCAGGTGAACTGTCTGGTTCTCTTCTTGGAAATGGTTCATCTACGTCTTCCTCTCCTGTGCCACCAAGTGGTTCTCCATTAGGTATAAAGGGACGGACTTTGTCACGCACCATAAGTTCAAGAACACATATAACCAAGAAATTGAAGCCACTGCATTGGTTAAAGTTATCTAAAGCAGTGCAAGGAAGCTTATGGGCTGAAGCCCAAAAAACTGGTGAAGCTGCCAGGGCACCGGAGATTGACATGTCAGAGCTTGAAAGTCTTTTCTCAGCGGCAGTTCCTGCTCCTGATCAGCTCCAAAAGTCGAGTGGACGCGGTTCAGTTGGCAATAAGCCTGAGAAAGTACAACTGATTGATCACAGACGTGCTTACAATTGTGAAATTATGCTTTCAAAGGTCAAGGTGCCTTTGCATGATTTAATGAGTTCTGTGCTTGACCTTGAAGATTCAGCTTTGGATATCGATCAGGTCGAGAATCTTATTAAGTTTTGTCCGACAAAGGAGGAAATGGATTTACTTAAGGGGTACACTGGAGAAAAGGAGAAGCTCGGTAAATGTGAACAGTTCTTCTTAGAGTTGATGCAAGTACCTCGTGCTGAATCTAAGCTTCGAGTTTTCTCATTCAAAATACAGTTCAGCTCTCAGGTTGCGGACCTCAAAAAAAGCTTGAATTTTGTTAACTCTGCTGCAGAAGAGATAAAAAGTTCAGTGAAGTTGAAGAGAATCATGCAGACAATACTATCTCTTGGAAATGCCTTAAACCAGGGAACAGCAAGGGGCTCTGCTATAGGATTTAGGCTGGATAGCCTTCTTAAACTGACAGAAACTCGTGCACGAAACAACAAGATGACACTAATGCATTATCTTTGCAAGATACTTGCTGACAAACTGCCAGAAGTTTTGGATTTTTCTAAAGATCTTGCAAACTTGGAGCCTGCATCAAAGGTACAATTGAAGGTTTTGGCAGAGGAGATGCAAGCAATTAGCAAAGGGTTGGAGAAAGTTGTTCAAGAATTGTCTACATCTGAAAATGATGGCCCAATATCCAATAATTTCAGAATGGTTCTAAAGGAGTTCCTTCGTTTTGCTGAAGCTGAAGTGCGAACTTTAGCTTCTCTGTACTCTACTGTGGGTAGAAATGTAGATTCTTTGATTCTTTATTTCGGTGAAGATCCAGCTCGCTGCCCCTTTGAACAAGTTATGTCAACCTTATGCAACTTCGTGAGAATGTTTAACCGAGCCCATGAGGAAAACTGCAAGCAGATTGAGCTTGAAATGAAGAAAGCAACTGAAGGTGAAAAATCAAAGACGGGGCACTTGCACAAGAGGACAAGGACCAAACAGTTGTCAAACTCCCAGATCGAGATTGGCAATGTCAAGTAA 3705 42.86 MQSQMGDILSKYDMTIMDYPQQYEGCPVLTMEVVHHFLRSCESWLSLGQNNVLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPRELLHFLSPMNPIPSQLRYLQYVARRNVALEWPPMDRALTLDCIILRFIPNFDGEGGCRPIFRIYGQDPLLVSDRTPKVLYSTPKRSKNVRAFKQAESELVKIDVNCHIQGDVVLECITLHDDMEFEEMMFRAMFNTAFIRSNILILNREEIDTLWNAKDKFPKDFRAEILFSEMDAGTRTVANDVLCIEEEGLPMEAFAKVQEIFSHVDWLDPKADVALSVLHQMNALNIAQEKPDNNSLWSTQVSSLLQSASPRKLPQKFTLENRSKFLEKEGSSPTSKFSPDAAKTEQNNESNSVFQRVPQSPDPFPLTFDMLQDSPISDRSDRTSYSASVGSHSFIDSEGEIDVSHLKTASSSFRDATLDVSLAPESPQTKNLYTETTIPPPPPLPQLSTDIYAANSLPPPHSTSTESLLQSNNFSTLQPNRASLTEEIEIYSKDQNQLSAIIPPVSVTSTISSSVQSSPPPPPPPPSTPPLKDTIAVRVKASLTTPSFPSTLASHPTIASSVPQPPPPPPPSTSTVTHKISSPIPSPPPPPPTPSPPPPPPIVITNPKISSPVPPPPPPLPMTSKQVESTTTSPSIPPPPPPPIPMTSRQVGSTSTSSPVPPPAPPLPSRQVGSTSTSSPVPPPPPPLPSRQVGSTSTSSHVPPPPPPPASTKGSPSSVPSAPPPPTLSGRGPSKSGELSGSLLGNGSSTSSSPVPPSGSPLGIKGRTLSRTISSRTHITKKLKPLHWLKLSKAVQGSLWAEAQKTGEAARAPEIDMSELESLFSAAVPAPDQLQKSSGRGSVGNKPEKVQLIDHRRAYNCEIMLSKVKVPLHDLMSSVLDLEDSALDIDQVENLIKFCPTKEEMDLLKGYTGEKEKLGKCEQFFLELMQVPRAESKLRVFSFKIQFSSQVADLKKSLNFVNSAAEEIKSSVKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKILADKLPEVLDFSKDLANLEPASKVQLKVLAEEMQAISKGLEKVVQELSTSENDGPISNNFRMVLKEFLRFAEAEVRTLASLYSTVGRNVDSLILYFGEDPARCPFEQVMSTLCNFVRMFNRAHEENCKQIELEMKKATEGEKSKTGHLHKRTRTKQLSNSQIEIGNVK* 1235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15792317 15804027 - CsaV3_1G028880.1 Csa01g01880 516377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01880 1234 MobiDBLite consensus disorder prediction 739 769 - -
Csa01g01880 1234 MobiDBLite consensus disorder prediction 549 571 - -
Csa01g01880 1234 Gene3D Formin, FH2 domain 810 1196 IPR042201 -
Csa01g01880 1234 ProSiteProfiles Formin homology-2 (FH2) domain profile. 812 1211 IPR015425 -
Csa01g01880 1234 MobiDBLite consensus disorder prediction 621 662 - -
Csa01g01880 1234 MobiDBLite consensus disorder prediction 555 570 - -
Csa01g01880 1234 Gene3D - 127 271 - -
Csa01g01880 1234 Gene3D Protein tyrosine phosphatase superfamily 2 122 IPR029021 -
Csa01g01880 1234 SMART it6_source 473 1230 IPR015425 -
Csa01g01880 1234 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 132 269 IPR035892 -
Csa01g01880 1234 Pfam Formin Homology 2 Domain 819 1186 IPR015425 -
Csa01g01880 1234 SUPERFAMILY Formin homology 2 domain (FH2 domain) 743 1202 - -
Csa01g01880 1234 MobiDBLite consensus disorder prediction 672 686 - -
Csa01g01880 1234 PANTHER FORMIN-J 2 1213 - -
Csa01g01880 1234 Pfam C2 domain of PTEN tumour-suppressor protein 130 268 IPR014020 -
Csa01g01880 1234 MobiDBLite consensus disorder prediction 585 814 - -
Csa01g01880 1234 Coils Coil 1186 1206 - -
Csa01g01880 1234 MobiDBLite consensus disorder prediction 1204 1234 - -
Csa01g01880 1234 MobiDBLite consensus disorder prediction 369 397 - -
Csa01g01880 1234 ProSiteProfiles C2 tensin-type domain profile. 130 269 IPR014020 -
Csa01g01880 1234 SMART PTEN_C2_2 128 268 IPR014020 -
Csa01g01880 1234 MobiDBLite consensus disorder prediction 364 398 - -
Csa01g01880 1234 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 7 117 IPR029021 -
Csa01g01880 1234 MobiDBLite consensus disorder prediction 772 797 - -
Csa01g01880 1234 MobiDBLite consensus disorder prediction 599 613 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01880 - - - csv:101221713 2137.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01880 Csa-Chr1:15792317 Csa03g02724 Csa-Chr3:26029083 1.69E-117 dispersed
Csa01g01729 Csa-Chr1:13913836 Csa01g01880 Csa-Chr1:15792317 1.34E-172 transposed
Csa01g01730 Csa-Chr1:13925596 Csa01g01880 Csa-Chr1:15792317 0 transposed
Csa01g01880 Csa-Chr1:15792317 Csa04g02634 Csa-Chr4:25716565 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa06g02964 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 63.0 2.8e-195 678.7
Csa07g00734 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 56.6 1.0e-181 633.6
Csa03g03804 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.7 1.1e-155 546.6
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1176.0
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.4
Csa01g01880 . 2 1214 Protein tyrosine phosphatase (PTP) family AT5G58160 52.7 2.2e-284 975.7
Csa01g01730 . 1 455 Protein tyrosine phosphatase (PTP) family AT5G58160 57.3 1.1e-150 531.6
Csa01g01729 . 87 256 Protein tyrosine phosphatase (PTP) family AT5G58160 67.1 7.8e-56 216.5
Csa07g01336 . 65 374 Protein tyrosine phosphatase (PTP) family AT1G71860 66.0 1.6e-117 419.5
Csa01g00011 . 7 913 Protein tyrosine phosphatase (PTP) family AT5G23720 64.4 0.0e+00 1085.1
Csa06g01564 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 55.7 1.4e-40 162.9
Csa06g02399 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.3 5.1e-70 260.8
Csa05g02758 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 68.3 1.2e-113 406.4
Csa05g00878 . 29 283 Protein tyrosine phosphatase (PTP) family AT3G10940 74.0 3.2e-111 398.3
Csa03g03940 . 151 599 Protein tyrosine phosphatase (PTP) family AT3G01510 71.9 2.0e-203 705.3
Csa06g01343 . 15 215 Protein tyrosine phosphatase (PTP) family AT2G32960 59.1 8.4e-74 273.9
Csa06g02393 . 43 240 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 6.2e-69 257.7
Csa01g03339 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 1.5e-54 209.9
Csa03g00252 . 1 335 Protein tyrosine phosphatase (PTP) family AT2G35680 55.6 7.3e-102 367.5
Csa02g00073 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.6 4.6e-80 295.0
Csa03g00252 . 38 213 Protein tyrosine phosphatase (PTP) family AT5G56610 51.7 1.0e-44 176.8
Csa06g01343 . 44 214 Protein tyrosine phosphatase (PTP) family AT4G03960 76.6 5.7e-78 287.3
Csa06g02393 . 41 239 Protein tyrosine phosphatase (PTP) family AT4G03960 61.3 2.2e-66 248.8
Csa01g03339 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 1.9e-57 219.2
Csa01g03339 . 3 201 Protein tyrosine phosphatase (PTP) family AT3G02800 69.7 2.8e-80 295.0
Csa06g01343 . 44 208 Protein tyrosine phosphatase (PTP) family AT3G02800 60.6 3.1e-55 211.8
Csa06g02393 . 37 228 Protein tyrosine phosphatase (PTP) family AT3G02800 50.5 8.7e-50 193.7
Csa05g00673 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.6 1.0e-61 235.3
Csa03g03804 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.7 1.1e-155 546.6
Csa07g00734 . 33 613 Protein tyrosine phosphatase (PTP) family AT3G19420 65.8 2.4e-220 761.9
Csa06g02964 . 31 608 Protein tyrosine phosphatase (PTP) family AT3G19420 62.6 9.9e-198 686.8
Csa06g02964 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 63.0 2.8e-195 678.7
Csa07g00734 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 56.6 1.0e-181 633.6
Csa01g01880 . 2 1214 Protein tyrosine phosphatase (PTP) family AT5G58160 52.7 2.2e-284 975.7
Csa01g01730 . 1 455 Protein tyrosine phosphatase (PTP) family AT5G58160 57.3 1.1e-150 531.6
Csa01g01729 . 87 256 Protein tyrosine phosphatase (PTP) family AT5G58160 67.1 7.8e-56 216.5
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1176.0
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.4
Csa06g01286 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 57.6 8.9e-71 263.8
Csa03g00186 . 19 303 Protein tyrosine phosphatase (PTP) family AT2G35320 64.9 1.5e-109 392.9
Csa04g01589 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.5 3.4e-276 947.6
Csa04g01589 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.4 1.3e-251 865.9
Csa04g01589 . 86 673 Protein tyrosine phosphatase (PTP) family AT5G28210 56.3 1.8e-183 639.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009302 0 2 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 2 0 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa01g01880 Csa_Chr01 FPKM 7.435444 8.526293 6.565583 6.378017 15.065763 13.501043 14.548237 0.181305 0.019151 0.047627