Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01880 ATGCAGAGTCAGATGGGTGATATCTTATCTAAGTATGATATGACCATAATGGACTACCCTCAGCAGTACGAGGGCTGCCCAGTTCTGACGATGGAAGTGGTTCACCATTTTTTAAGATCATGTGAGAGTTGGCTTTCCCTTGGGCAGAATAATGTTTTGCTAATGCATTGTGAACGTGGTGGTTGGCCAGTTTTAGCTTTCATGCTTTCAGCTCTCTTGATTTATAGAAAACAATATAGTGGCGAACAAAGAACATTGGACATGGTTTATAGGCAGGCACCTCGTGAGCTTTTGCATTTTTTGTCTCCTATGAATCCGATTCCATCTCAATTAAGGTATCTGCAATATGTTGCGAGGAGGAATGTAGCCTTAGAATGGCCTCCTATGGACAGAGCTCTCACTTTGGATTGTATCATTTTGAGGTTTATTCCAAATTTTGATGGGGAGGGTGGTTGCCGTCCAATATTTCGAATATATGGACAAGATCCTCTGCTGGTCAGTGATCGAACTCCTAAAGTTCTTTATTCAACTCCAAAAAGAAGCAAAAATGTCCGAGCTTTCAAACAGGCAGAGTCTGAACTGGTTAAGATTGATGTTAATTGTCATATTCAAGGTGATGTTGTTCTTGAGTGCATCACCTTGCATGACGACATGGAATTTGAAGAGATGATGTTCAGAGCAATGTTTAATACTGCTTTTATTCGCTCTAATATTTTAATTCTCAACCGTGAAGAGATTGATACATTGTGGAATGCTAAAGATAAATTTCCAAAAGACTTCCGAGCAGAGATTCTTTTCTCTGAGATGGATGCTGGAACTCGTACTGTTGCAAATGATGTACTTTGCATTGAGGAAGAAGGTCTCCCCATGGAAGCATTTGCTAAAGTGCAAGAGATCTTTAGTCATGTGGATTGGTTAGATCCCAAGGCAGATGTTGCCCTTAGTGTGCTCCATCAGATGAATGCCTTAAACATAGCCCAAGAGAAGCCAGACAATAATTCTCTTTGGAGTACGCAAGTTAGTTCTTTACTTCAGAGTGCAAGTCCCAGAAAACTTCCACAGAAGTTCACATTGGAGAACAGAAGTAAATTCCTAGAGAAGGAAGGATCTAGTCCAACCTCTAAATTTTCTCCGGATGCTGCTAAAACCGAACAAAACAATGAATCTAATTCAGTATTCCAACGGGTGCCTCAATCTCCAGACCCTTTTCCACTCACCTTCGACATGTTGCAAGATTCCCCAATCTCAGATAGAAGTGATAGGACCTCATACAGTGCTTCGGTTGGAAGCCACTCATTTATTGATTCTGAAGGAGAAATAGATGTTTCTCATCTGAAAACTGCATCTTCATCTTTTCGGGATGCAACATTGGATGTTTCTCTAGCACCTGAATCTCCTCAGACTAAAAATTTATATACAGAGACAACCATACCACCACCTCCTCCTCTCCCACAACTTTCCACTGATATTTATGCTGCAAATTCTCTACCTCCTCCTCACTCTACTTCAACTGAATCACTACTTCAGTCTAATAACTTTTCAACTCTACAACCAAATAGAGCTTCACTCACTGAGGAAATAGAAATCTATTCAAAGGATCAAAATCAGTTATCAGCCATCATCCCTCCCGTGTCTGTAACCTCTACAATTAGTTCCTCAGTACAGTCTTCTCCACCACCTCCTCCACCACCTCCTTCAACACCTCCTTTGAAGGATACCATAGCTGTTAGAGTTAAAGCTTCTTTGACAACACCCTCTTTTCCTTCTACATTAGCTTCTCATCCTACAATTGCATCCTCCGTTCCTCAACCACCACCTCCTCCTCCTCCTTCCACATCCACTGTAACTCATAAAATTTCATCTCCAATCCCTTCACCTCCACCACCACCGCCTACTCCTTCTCCTCCTCCTCCTCCTCCAATAGTCATTACAAATCCTAAAATCTCCTCTCCAGTGCCTCCACCACCACCTCCTCTCCCTATGACTTCCAAACAGGTTGAAAGTACAACAACATCCCCATCTATTCCTCCTCCACCACCACCACCTATTCCTATGACATCCAGGCAGGTTGGAAGTACTTCAACATCTTCGCCTGTTCCTCCACCAGCACCACCTCTTCCATCTAGACAGGTTGGAAGTACTTCAACATCTTCGCCTGTTCCTCCACCACCACCACCTCTTCCATCCAGACAGGTTGGAAGTACTTCAACATCTTCACATGTTCCCCCTCCTCCACCACCGCCTGCTTCCACCAAAGGCTCCCCTTCATCTGTTCCTTCTGCTCCCCCTCCTCCTACCCTTTCTGGGAGAGGGCCTTCAAAATCAGGTGAACTGTCTGGTTCTCTTCTTGGAAATGGTTCATCTACGTCTTCCTCTCCTGTGCCACCAAGTGGTTCTCCATTAGGTATAAAGGGACGGACTTTGTCACGCACCATAAGTTCAAGAACACATATAACCAAGAAATTGAAGCCACTGCATTGGTTAAAGTTATCTAAAGCAGTGCAAGGAAGCTTATGGGCTGAAGCCCAAAAAACTGGTGAAGCTGCCAGGGCACCGGAGATTGACATGTCAGAGCTTGAAAGTCTTTTCTCAGCGGCAGTTCCTGCTCCTGATCAGCTCCAAAAGTCGAGTGGACGCGGTTCAGTTGGCAATAAGCCTGAGAAAGTACAACTGATTGATCACAGACGTGCTTACAATTGTGAAATTATGCTTTCAAAGGTCAAGGTGCCTTTGCATGATTTAATGAGTTCTGTGCTTGACCTTGAAGATTCAGCTTTGGATATCGATCAGGTCGAGAATCTTATTAAGTTTTGTCCGACAAAGGAGGAAATGGATTTACTTAAGGGGTACACTGGAGAAAAGGAGAAGCTCGGTAAATGTGAACAGTTCTTCTTAGAGTTGATGCAAGTACCTCGTGCTGAATCTAAGCTTCGAGTTTTCTCATTCAAAATACAGTTCAGCTCTCAGGTTGCGGACCTCAAAAAAAGCTTGAATTTTGTTAACTCTGCTGCAGAAGAGATAAAAAGTTCAGTGAAGTTGAAGAGAATCATGCAGACAATACTATCTCTTGGAAATGCCTTAAACCAGGGAACAGCAAGGGGCTCTGCTATAGGATTTAGGCTGGATAGCCTTCTTAAACTGACAGAAACTCGTGCACGAAACAACAAGATGACACTAATGCATTATCTTTGCAAGATACTTGCTGACAAACTGCCAGAAGTTTTGGATTTTTCTAAAGATCTTGCAAACTTGGAGCCTGCATCAAAGGTACAATTGAAGGTTTTGGCAGAGGAGATGCAAGCAATTAGCAAAGGGTTGGAGAAAGTTGTTCAAGAATTGTCTACATCTGAAAATGATGGCCCAATATCCAATAATTTCAGAATGGTTCTAAAGGAGTTCCTTCGTTTTGCTGAAGCTGAAGTGCGAACTTTAGCTTCTCTGTACTCTACTGTGGGTAGAAATGTAGATTCTTTGATTCTTTATTTCGGTGAAGATCCAGCTCGCTGCCCCTTTGAACAAGTTATGTCAACCTTATGCAACTTCGTGAGAATGTTTAACCGAGCCCATGAGGAAAACTGCAAGCAGATTGAGCTTGAAATGAAGAAAGCAACTGAAGGTGAAAAATCAAAGACGGGGCACTTGCACAAGAGGACAAGGACCAAACAGTTGTCAAACTCCCAGATCGAGATTGGCAATGTCAAGTAA 3705 42.86 MQSQMGDILSKYDMTIMDYPQQYEGCPVLTMEVVHHFLRSCESWLSLGQNNVLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPRELLHFLSPMNPIPSQLRYLQYVARRNVALEWPPMDRALTLDCIILRFIPNFDGEGGCRPIFRIYGQDPLLVSDRTPKVLYSTPKRSKNVRAFKQAESELVKIDVNCHIQGDVVLECITLHDDMEFEEMMFRAMFNTAFIRSNILILNREEIDTLWNAKDKFPKDFRAEILFSEMDAGTRTVANDVLCIEEEGLPMEAFAKVQEIFSHVDWLDPKADVALSVLHQMNALNIAQEKPDNNSLWSTQVSSLLQSASPRKLPQKFTLENRSKFLEKEGSSPTSKFSPDAAKTEQNNESNSVFQRVPQSPDPFPLTFDMLQDSPISDRSDRTSYSASVGSHSFIDSEGEIDVSHLKTASSSFRDATLDVSLAPESPQTKNLYTETTIPPPPPLPQLSTDIYAANSLPPPHSTSTESLLQSNNFSTLQPNRASLTEEIEIYSKDQNQLSAIIPPVSVTSTISSSVQSSPPPPPPPPSTPPLKDTIAVRVKASLTTPSFPSTLASHPTIASSVPQPPPPPPPSTSTVTHKISSPIPSPPPPPPTPSPPPPPPIVITNPKISSPVPPPPPPLPMTSKQVESTTTSPSIPPPPPPPIPMTSRQVGSTSTSSPVPPPAPPLPSRQVGSTSTSSPVPPPPPPLPSRQVGSTSTSSHVPPPPPPPASTKGSPSSVPSAPPPPTLSGRGPSKSGELSGSLLGNGSSTSSSPVPPSGSPLGIKGRTLSRTISSRTHITKKLKPLHWLKLSKAVQGSLWAEAQKTGEAARAPEIDMSELESLFSAAVPAPDQLQKSSGRGSVGNKPEKVQLIDHRRAYNCEIMLSKVKVPLHDLMSSVLDLEDSALDIDQVENLIKFCPTKEEMDLLKGYTGEKEKLGKCEQFFLELMQVPRAESKLRVFSFKIQFSSQVADLKKSLNFVNSAAEEIKSSVKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKILADKLPEVLDFSKDLANLEPASKVQLKVLAEEMQAISKGLEKVVQELSTSENDGPISNNFRMVLKEFLRFAEAEVRTLASLYSTVGRNVDSLILYFGEDPARCPFEQVMSTLCNFVRMFNRAHEENCKQIELEMKKATEGEKSKTGHLHKRTRTKQLSNSQIEIGNVK* 1235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15792317 15804027 - CsaV3_1G028880.1 Csa01g01880 516377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01880 1234 MobiDBLite consensus disorder prediction 739 769 - -
Csa01g01880 1234 MobiDBLite consensus disorder prediction 549 571 - -
Csa01g01880 1234 Gene3D Formin, FH2 domain 810 1196 IPR042201 -
Csa01g01880 1234 ProSiteProfiles Formin homology-2 (FH2) domain profile. 812 1211 IPR015425 -
Csa01g01880 1234 MobiDBLite consensus disorder prediction 621 662 - -
Csa01g01880 1234 MobiDBLite consensus disorder prediction 555 570 - -
Csa01g01880 1234 Gene3D - 127 271 - -
Csa01g01880 1234 Gene3D Protein tyrosine phosphatase superfamily 2 122 IPR029021 -
Csa01g01880 1234 SMART it6_source 473 1230 IPR015425 -
Csa01g01880 1234 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 132 269 IPR035892 -
Csa01g01880 1234 Pfam Formin Homology 2 Domain 819 1186 IPR015425 -
Csa01g01880 1234 SUPERFAMILY Formin homology 2 domain (FH2 domain) 743 1202 - -
Csa01g01880 1234 MobiDBLite consensus disorder prediction 672 686 - -
Csa01g01880 1234 PANTHER FORMIN-J 2 1213 - -
Csa01g01880 1234 Pfam C2 domain of PTEN tumour-suppressor protein 130 268 IPR014020 -
Csa01g01880 1234 MobiDBLite consensus disorder prediction 585 814 - -
Csa01g01880 1234 Coils Coil 1186 1206 - -
Csa01g01880 1234 MobiDBLite consensus disorder prediction 1204 1234 - -
Csa01g01880 1234 MobiDBLite consensus disorder prediction 369 397 - -
Csa01g01880 1234 ProSiteProfiles C2 tensin-type domain profile. 130 269 IPR014020 -
Csa01g01880 1234 SMART PTEN_C2_2 128 268 IPR014020 -
Csa01g01880 1234 MobiDBLite consensus disorder prediction 364 398 - -
Csa01g01880 1234 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 7 117 IPR029021 -
Csa01g01880 1234 MobiDBLite consensus disorder prediction 772 797 - -
Csa01g01880 1234 MobiDBLite consensus disorder prediction 599 613 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01880 Csa-Chr1:15792317 Csa03g02724 Csa-Chr3:26029083 1.69E-117 dispersed
Csa01g01729 Csa-Chr1:13913836 Csa01g01880 Csa-Chr1:15792317 1.34E-172 transposed
Csa01g01730 Csa-Chr1:13925596 Csa01g01880 Csa-Chr1:15792317 0 transposed
Csa01g01880 Csa-Chr1:15792317 Csa04g02634 Csa-Chr4:25716565 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01880 - - csv:101221713 2137.84