Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01887 ATGTCGGACGAGGAGCACCACTTCGACTCCAAGGCCGACGCCGGAGCTTCCAAGACTTTTCCTCAGCAGGCTGGAGCCATTCGCAAAAATGGCTACATCGTAATCAAGAACAGACCCTGCAAGGTAGTTGAAGTTTCTACTTCAAAAACTGGCAAACATGGGCATGCAAAGTGCCACTTTGTGGCAATTGACATATTCAATGGGAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAACTGTGATGTTCCCCATGTTAATCGCACCGATTATCAGCTGATCGACATATCTGAGGATGGTTTTGTCAGTCTCCTTACTGAAAATGGAAACACCAAGGATGACCTGAGGCTTCCCACCGATGATAACCTGCTTACGCAGCTTAAAGATGGGTTCGCTGAAGGCAAAGATCTCGTACTAACTGTCATGTCTGCAATGGGAGAAGAGCAGATCTGTGCTCTCAAGGACATTGGTCCTAAAAATTAA 483 45.76 MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN* 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15847906 15851882 + CsaV3_1G028950.1 Csa01g01887 516384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01887 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Csa01g01887 160 CDD S1_eIF5A 86 156 - -
Csa01g01887 160 Gene3D - 86 159 IPR012340 -
Csa01g01887 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Csa01g01887 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Csa01g01887 160 TIGRFAM eIF_5A: translation elongation factor IF5A 18 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Csa01g01887 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Csa01g01887 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Csa01g01887 160 MobiDBLite consensus disorder prediction 1 21 - -
Csa01g01887 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Csa01g01887 160 Gene3D - 1 85 IPR014722 -
Csa01g01887 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Csa01g01887 160 PANTHER BNAA07G09420D PROTEIN 1 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01887 Csa-Chr1:15847906 Csa02g02429 Csa-Chr2:21449707 4.27E-109 dispersed
Csa01g01887 Csa-Chr1:15847906 Csa04g02632 Csa-Chr4:25702900 5.98E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01887 K03263 - csv:101210204 329.331