Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01888 ATGGCGGAACCCGAAAGCTTTGGAACTCACCAACTCGGAAGCTCCAACGCGGCTACTGAAGGCCAGGAAGATGATGAAGAAGAAATGGACGATTCGGATGATGAATCAGAGGTGGACTTGGGAGGAGAAGGAGGAGGAACAGGGAGTGAGTTCAAACCGACTGAGTTGACAACCGGTTCGTCGCTTAATGAAGCTTTGGTGACGGGTTCACTTTCTGAAACCCTAACGGTGGCTTCGTCCGCTGAAAACGGTCCGTCTGATGGTTTGCAGCCTGACGAAGGAGCTGAATTGAAGCAAGCTCCGTCTTCCCACAGTGAGCCTTTGGCTGTTGAAGCAACCCAGACAGATAAGGTGCAAGAACAAAACCGTCTTCAGTTGACGATATTTAAAGGGCCTGATTCAGACCAATCACCAACTTCAGTTACCCAGTCTATCTCATCCTATGCAAGTTCAAATTTATCTGAACATAAGCTGTCACCTAAGAGGGTCCAGAAAATATGTAAGCCAGAGCCAAGCCAGAAAAATTTCTTCAACCATAAAACTCCATCATCTGTTCCCAATGCAAGGACACCTGCTTCAGATGGTTACAATTGGAGAAAATACGGTCAGAAGCAAGTGAAGAGTCCTAAGGGTTCACGTAGCTATTACAAGTGTACATATTCTGAATGCTTTGCTAAGAAGATTGAATGTTGTGATGACTCAGGGCAAACAACAGAGATTGTTTACAAGAGTCAACATAGCCACGATCCACCTAGGAAGATTAGTACACCAAAGGAAAGTAAGCTTGTGCCTTATGTTGAGCCTGTGGTTAAAAAAATCATTGCTGAGCATTCCAGAAGAGTAATTAATGATTCAGATTCTCCCACACCTTCAAAAGAACCGTTACGAGAAGCAGCTATAGTCGTCTTTGAAAGGAAACGACAGCACTCAAATGATTCTAATGGAAATGATGAATATAAAATCAAAGATGAGAATGACGATGAACCTGGGACAAAACAAATAGTTAAAAAAAGCAGTGCGGGAAACTCAGGCACTCCTTTAAAACCTGGAAAGAAACCCAAATTTGTGGTGCATGCTGCAGGTGACGTTGGAATCTCGGGTGACGGATACAGATGGCGGAAGTATGGTCAGAAAATGGTGAAAGGAAATCCTCATCCTAGGAACTACTACCGATGTACTTCTGCTGGGTGTCCAGTCCGAAAGCACATTGAATCAGCGGTAGAAAATCCAAATGCAGTAATAATAACATACAAGGGAGTACATGACCACGACACGCCTGTACCAAAGAAACGACACGGTCCACCAAGTGCTCTTCTTGTAGCTGCTGCAGCACCAGCCTCCATGAGCAGCAATGCACAACCGAAGAAAACTGATGTGGTGGAGTCCCAAATATCTTCAACACAGTGGTCTGTGGATGCTGAAGGAGAGTTGACTGGTGAGGCCTTGGAGCTTGGGGGTGAGAAGGCAATGGAATCTGCTCGAACACTTTTGAGCATTGGATTTGAAATCAAGCCTTGCTGA 1521 45.04 MAEPESFGTHQLGSSNAATEGQEDDEEEMDDSDDESEVDLGGEGGGTGSEFKPTELTTGSSLNEALVTGSLSETLTVASSAENGPSDGLQPDEGAELKQAPSSHSEPLAVEATQTDKVQEQNRLQLTIFKGPDSDQSPTSVTQSISSYASSNLSEHKLSPKRVQKICKPEPSQKNFFNHKTPSSVPNARTPASDGYNWRKYGQKQVKSPKGSRSYYKCTYSECFAKKIECCDDSGQTTEIVYKSQHSHDPPRKISTPKESKLVPYVEPVVKKIIAEHSRRVINDSDSPTPSKEPLREAAIVVFERKRQHSNDSNGNDEYKIKDENDDEPGTKQIVKKSSAGNSGTPLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIESAVENPNAVIITYKGVHDHDTPVPKKRHGPPSALLVAAAAPASMSSNAQPKKTDVVESQISSTQWSVDAEGELTGEALELGGEKAMESARTLLSIGFEIKPC* 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15852778 15856825 + CsaV3_1G028960.1 Csa01g01888 516385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01888 506 MobiDBLite consensus disorder prediction 174 191 - -
Csa01g01888 506 MobiDBLite consensus disorder prediction 51 86 - -
Csa01g01888 506 SUPERFAMILY WRKY DNA-binding domain 362 426 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa01g01888 506 ProSiteProfiles WRKY domain profile. 361 426 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa01g01888 506 MobiDBLite consensus disorder prediction 304 353 - -
Csa01g01888 506 SMART WRKY_cls 366 425 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa01g01888 506 SMART WRKY_cls 192 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa01g01888 506 Pfam WRKY DNA -binding domain 194 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa01g01888 506 Pfam WRKY DNA -binding domain 368 423 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa01g01888 506 MobiDBLite consensus disorder prediction 1 213 - -
Csa01g01888 506 MobiDBLite consensus disorder prediction 304 333 - -
Csa01g01888 506 MobiDBLite consensus disorder prediction 106 157 - -
Csa01g01888 506 ProSiteProfiles WRKY domain profile. 187 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa01g01888 506 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 19 504 IPR044810 GO:0003700
Csa01g01888 506 Gene3D WRKY domain 351 427 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa01g01888 506 Gene3D WRKY domain 180 252 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa01g01888 506 SUPERFAMILY WRKY DNA-binding domain 190 251 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa01g01888 506 MobiDBLite consensus disorder prediction 20 40 - -
Csa01g01888 506 PANTHER WRKY TRANSCRIPTION FACTOR 32-RELATED 19 504 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01888 Csa-Chr1:15852778 Csa03g00441 Csa-Chr3:3723776 1.05E-14 dispersed
Csa01g01888 Csa-Chr1:15852778 Csa05g03014 Csa-Chr5:30396040 2.57E-15 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30744 PF03106 WRKY 6.50E-24 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01888 - - csv:101209954 957.592