Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01904 ATGCAGAAAGGTGATCAAACTGTTCTAAGCTTGAGACCTGGTGGCGGTCGTCCTAGACTCCTTGGTCCTCGCTTTGACCTTTCATCTTCATCTTCCTCTTCATCTTCTTTTGCTTTCGGTTCTTTTTCCCCTGATCTCCCTACCCTTCGTCCCCATGCCGCTTCCGCTTCTTCCGCTTCTTTTTCTGTAAAGGGTGGAGATTCACGGTTTGAGGGTCGTGAGCGTGTTCGATATACCCGAGATCAGCTTTTGCAGCTTCGGGAGGGTGTGGAAGTTCCAGATGATATACTAAAACTTAAACGGGAAATTGAAGTGGAAATTTTTGGCGAGGAACAAAGTTGGAGTCGTGGAGAGAGCAATCAACTCAATCAGTCTCAGAATCGGTATTCTGAGCCTGACAATCGTGACTGGCGTGGGCGCTCTGCCCAATTCTCTCCTTCCGGTGAGGAGAGGTCCAGGGAAACCAATCGAGACAGAGATTTTGGTGGTCATTTTGACTCTAGACAGCAAGATGCGAATAACTTGAATCGTCAAGATTCTCACTCATCTTGGACCCGAACCACTTCTAACCAAGGGGGAGCACCTCCTACATTAATCAAAGCTGAGGTACCATGGTCAGCTAGGAGAGGAAATCTCTCTGATAAGGATCGTGTCTTGAAGACTGTAAAGGGGATATTGAACAAGTTAACACCAGAAAAGTTTGATCTCCTCAAGGGTCAGCTAATTGACTCTGGAATCACCTCTGCTGATATTTTGAAGGATGTCATTTCACTCATTTTTGACAAGGCTGTTCTTGAGCCCACATTTTGCCCCATGTATGCACAATTGTGTTCCGATCTGAACCAGAAGCTACCTCAATTTCCCTCTGATGAACCGGGTGGTAGGGAAATTACTTTTAAACGAGTCCTCTTAAATATCTGTCAGGAGGCTTTTGAAGGTGCAGACAAGTTGAGGGAAGAGGTTAGGCAGATGACTGCCCCTGAACAAGAGGGTGAGCGCAGAGATAAAGACAGACTTGTGAAACTTCGTACTCTTGGAAATATTCGATTGATTGGAGAGCTTCTAAAGCAAAAGATGGTGCCTGAGAAGATTGTCCACCACATTGTCCAGGAACTTTTAGGACCAGATAACAAAACCTGTCCTGCCGAAGAAAATGTCGAGGCAATCTGTCAATTCTTTAACACCATAGGTAAGCAGCTAGACGAGAACACTAAATCGCGCCGTATTAATGACATGTACTTTGGCCGATTGAAAGAACTGACCACACACACTCAGTTGGCCCCACGATTGAAATTCATGCTCCGTGATGTTCTTGATTTGCGTGCTAACAATTGGGTTCCTAGGCGTGAGGAGGTTAAAGCCAAAACTATAACTGAAATACATTCAGAGGCAGAAAAAAATCTGGGACTACGCCCTGGTGCTACTGTTACTATCAGAAATAGTCGTGTTACGTCTGGTTCTGCCGGCAACACTAGCCCTGGAGGCTTTCCTATCAATCGTCCTGGTTTTGGGGGCATGATGCCTGGGATGCCTGGAACAAGGAAGATGCCTGGTATGCCAGGTATGGATAATGACAATTGGGAGGTACCTAGGGCTCGTTCTATAACAAGGGGGGCAGACGGATCTGGTATCCAGTATGCTGGACGTGGTCAACCGTTGGTTGGCAAAGCACCAACATTAAATGCAAGGCTACTGCCCCAGGGTACCGGTGGGCTCATTAATAATAAGACTAGTGCTCTATTGCAAGGTCAGGGTGCAGGTGGATCTACTGCTCGTCCTGTTAACTTTGGGCATGGATTAGAGCCTGCTGGTCAGGTTCATAAACCTATTACAGCAGTAACAGTCACTCCACTGGCGGAGAGACCACAGGCTCCAGTCGCATCTTTAAAACAAGATGATCTCAAAAAGAAAACTCTCTCCCTTCTTGAAGAATATTTCAGTATCCGGTTTTTGGATGAAGCTTTACAGTGTGTGGAAGAACTTATGTCACCGGCTTACCACCCTGAGGTAGTAAAAGAAGCCATTTCCTTAGCTCTAGAGGAAAGCCCACCCTGTGTTGAAGCGGTTGTAAAGTTTCTTGACTATTTATTCTCCAAGAAGGTCTTTACAACCAGTGACATTGAAACTGGATGTTTGGGATATGCGTCTATGCTCCATGACGCAGGTATTGATTTGCCAAAAGCGCCCATCAATTTTGGTGAGATAATTGGGAAACTTGTTCTATCCCGGTGTTTAGATTTTCAGGTGGTGAAAGAAGCCATTAAGAAGGTGGAAGATGACAGGTTCAGGAAAGATGTATTTGATGGTGTGTTGCAAACTATCAGCTCTAATGTGTCTGGGCGAGGATTATTGGATTCGTTGGCATCTGATATCGAGGACTGTCGAAGTCTGGCATATTGA 2400 45.71 MQKGDQTVLSLRPGGGRPRLLGPRFDLSSSSSSSSSFAFGSFSPDLPTLRPHAASASSASFSVKGGDSRFEGRERVRYTRDQLLQLREGVEVPDDILKLKREIEVEIFGEEQSWSRGESNQLNQSQNRYSEPDNRDWRGRSAQFSPSGEERSRETNRDRDFGGHFDSRQQDANNLNRQDSHSSWTRTTSNQGGAPPTLIKAEVPWSARRGNLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNQKLPQFPSDEPGGREITFKRVLLNICQEAFEGADKLREEVRQMTAPEQEGERRDKDRLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDMYFGRLKELTTHTQLAPRLKFMLRDVLDLRANNWVPRREEVKAKTITEIHSEAEKNLGLRPGATVTIRNSRVTSGSAGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARSITRGADGSGIQYAGRGQPLVGKAPTLNARLLPQGTGGLINNKTSALLQGQGAGGSTARPVNFGHGLEPAGQVHKPITAVTVTPLAERPQAPVASLKQDDLKKKTLSLLEEYFSIRFLDEALQCVEELMSPAYHPEVVKEAISLALEESPPCVEAVVKFLDYLFSKKVFTTSDIETGCLGYASMLHDAGIDLPKAPINFGEIIGKLVLSRCLDFQVVKEAIKKVEDDRFRKDVFDGVLQTISSNVSGRGLLDSLASDIEDCRSLAY* 800
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15915813 15922352 - CsaV3_1G029120.1 Csa01g01904 516401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01904 799 Pfam MA3 domain 634 746 IPR003891 -
Csa01g01904 799 SMART ma3_7 634 746 IPR003891 -
Csa01g01904 799 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 3 797 IPR045208 GO:0003743
Csa01g01904 799 MobiDBLite consensus disorder prediction 111 198 - -
Csa01g01904 799 MobiDBLite consensus disorder prediction 167 195 - -
Csa01g01904 799 SUPERFAMILY ARM repeat 629 788 IPR016024 -
Csa01g01904 799 MobiDBLite consensus disorder prediction 113 130 - -
Csa01g01904 799 Coils Coil 799 799 - -
Csa01g01904 799 MobiDBLite consensus disorder prediction 25 42 - -
Csa01g01904 799 Pfam MIF4G domain 219 444 IPR003890 GO:0003723|GO:0005515
Csa01g01904 799 SMART if4_15 219 444 IPR003890 GO:0003723|GO:0005515
Csa01g01904 799 SUPERFAMILY ARM repeat 212 447 IPR016024 -
Csa01g01904 799 MobiDBLite consensus disorder prediction 1 68 - -
Csa01g01904 799 MobiDBLite consensus disorder prediction 150 166 - -
Csa01g01904 799 Gene3D - 627 792 - -
Csa01g01904 799 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 3 797 - -
Csa01g01904 799 MobiDBLite consensus disorder prediction 482 502 - -
Csa01g01904 799 ProSiteProfiles MI domain profile. 633 755 IPR003891 -
Csa01g01904 799 Gene3D - 210 445 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00918 Csa-Chr1:5721955 Csa01g01904 Csa-Chr1:15915813 4.97E-06 dispersed
Csa02g00878 Csa-Chr2:8179036 Csa01g01904 Csa-Chr1:15915813 6.68E-65 transposed
Csa03g01052 Csa-Chr3:8425934 Csa01g01904 Csa-Chr1:15915813 9.84E-56 transposed
Csa01g01904 Csa-Chr1:15915813 Csa04g02620 Csa-Chr4:25638230 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01904 K03260 - csv:101207520 1541.55