Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01916 ATGACGAAGTCCACAGCGCAACAGGTTCAGATTAGGGAAGCGAATGGGAATAATGTTGTAATGAAGACTAAAACGAAGCGAACTCGGAGGAGTGTTCCGAGAGATTCTCCGCCTCAACGGAGCTCCATTTATCGCGGCGTTACTAGGCATCGTTGGACGGGGAGATATGAAGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCGCAGAACAAGAAAGGAAGACAAGTTTATCTTGGTGCATACGATGACGAGGAAGCAGCAGCCCACGCTTACGACCTTGCAGCACTAAAATATTGGGGCCAAGAAACCATTCTTAATTTTCCGCTAACTACGTACCAAAAAGAGCTGAAGGAAATGGAGGGCCAATCAAGAGAAGAATACATCGGGTCGTTGAGAAGACACCATCACAATGGTAGATGGGAAGCTCGGATTGGTAGAGTGTTTGGCAACAAGTATCTCTATCTTGGAACATATGCGACGCAAGAAGAAGCAGCTACGGCGTACGATATCGCAGCCATAGAATACCGTGGACTTAACGCCGTTACCAATTTTGACCTAAGCCGTTACATCAAATGGCTAAAACCGAGCAACGACGTCGTTTACGACAACAACCGCATCCTAACCGTCGATTCCATCCTCCCAAGCCCTAAGCAAGAACTCGACCTAGGCCTCTTCCCACCGGACCAAAACCAAAGCAGCACCGATTCAGCGACGCCTGAACCAATCGCCTTACCGCCGTCGCGCCGATCGACCACCTCCACCACCACCACCACCACCACCTCAGCTCTCGGCCTCCTCCTCCAATCCTCCAAGTTTAAGGAAATGATGGAGATGAACTCAGCGGCGGAATGTCCTTCGACGCCGTCGTCATCGGAGCAGCTCGAACGGCGGCGGTGTTTGTTTCCCGACGATGTTCAGACTTTCTTTGCGTGTGAGACATCGGGATCTTACTGCTATGGAGAAGCGGATGATGCAATGTTTAGCGACTTCAATTCTTTCGTTCCGCCGCCGCTATCGCATTACGATTTCGCCGATTAG 1041 50.14 MTKSTAQQVQIREANGNNVVMKTKTKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGQETILNFPLTTYQKELKEMEGQSREEYIGSLRRHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDIAAIEYRGLNAVTNFDLSRYIKWLKPSNDVVYDNNRILTVDSILPSPKQELDLGLFPPDQNQSSTDSATPEPIALPPSRRSTTSTTTTTTTSALGLLLQSSKFKEMMEMNSAAECPSTPSSSEQLERRRCLFPDDVQTFFACETSGSYCYGEADDAMFSDFNSFVPPPLSHYDFAD* 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16023418 16027051 + CsaV3_1G029240.1 Csa01g01916 516413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01916 346 MobiDBLite consensus disorder prediction 226 260 - -
Csa01g01916 346 SMART rav1_2 43 115 IPR001471 GO:0003700|GO:0006355
Csa01g01916 346 SMART rav1_2 134 192 IPR001471 GO:0003700|GO:0006355
Csa01g01916 346 PRINTS Ethylene responsive element binding protein signature 168 188 IPR001471 GO:0003700|GO:0006355
Csa01g01916 346 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Csa01g01916 346 SUPERFAMILY DNA-binding domain 128 188 IPR016177 GO:0003677
Csa01g01916 346 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 325 - -
Csa01g01916 346 MobiDBLite consensus disorder prediction 1 42 - -
Csa01g01916 346 ProSiteProfiles AP2/ERF domain profile. 127 186 IPR001471 GO:0003700|GO:0006355
Csa01g01916 346 ProSiteProfiles AP2/ERF domain profile. 43 109 IPR001471 GO:0003700|GO:0006355
Csa01g01916 346 CDD AP2 134 188 IPR001471 GO:0003700|GO:0006355
Csa01g01916 346 SUPERFAMILY DNA-binding domain 42 110 IPR016177 GO:0003677
Csa01g01916 346 Pfam AP2 domain 43 101 IPR001471 GO:0003700|GO:0006355
Csa01g01916 346 Pfam AP2 domain 133 178 IPR001471 GO:0003700|GO:0006355
Csa01g01916 346 Gene3D AP2/ERF domain 127 188 IPR036955 GO:0003700|GO:0006355
Csa01g01916 346 Gene3D AP2/ERF domain 43 111 IPR036955 GO:0003700|GO:0006355
Csa01g01916 346 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 325 - -
Csa01g01916 346 MobiDBLite consensus disorder prediction 221 260 - -
Csa01g01916 346 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01916 Csa-Chr1:16023418 Csa07g02084 Csa-Chr7:20100472 8.95E-125 dispersed
Csa06g02246 Csa-Chr6:20181470 Csa01g01916 Csa-Chr1:16023418 1.38E-20 dispersed
Csa01g01916 Csa-Chr1:16023418 Csa06g03048 Csa-Chr6:26200005 4.28E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30745 PF00847 AP2 6.80E-13 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01916 K09285 - csv:101219103 656.751