Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01919 ATGCTTCTTCCTAAACTCTTCTGTTTCATCATTCTCTCTTCTGCCTTCCTTTGCCTTTCTTATGAACCTCGCAACCCTGAAGTTGAAGCTCTGATTAATGTGAAGATGGCATTGAATGATCCGCACGGTGTACTCAGCAATTGGGACGAGGACTCTGTGGACCCTTGTAGTTGGGCAATGATCACCTGCTCCCCTGAGAATCTTGTTATAGGATTAGGAGCTCCGAGTCAGTCTCTTTCCGGAAGCTTGGCTGGGGCGATTGGGAACCTTACAAATCTTCGCCAAGTGCTGCTGCAGAACAATAACATTTCTGGTCCAATTCCCATTGAACTTGGAACTCTCCCATTGCTTCAAACATTAGATCTCTCAAACAACCGGTTCTCTGGTCCAATACCAACATCTTTTGCTCAGCTAAACGGTCTACGCTATCTGAGGCTGAACAATAATAGCTTGTCCGGGCCTTTTCCCTTGTCTTTGGCCAAAATCCCCCAGCTTGCTTTCTTGGACTTGTCTTTTAACAATCTCAGTGGACCAGTACCTGTGTTTTCAGCCAGAACATTCAATGTGGTGGGGAATCCTATGATATGCGGAAGTAGTCCTAATGAAGGTTGCTCTGGCTCAGCCAATGCCGTTCCTCTTTCTTTTTCTCTAGAATCATCCCCTGGAAGGCTTAGATCGAAAAGAATAGCAGTGGCACTTGGGGTCAGCCTCAGTTGTGCTTTTCTGATTCTCTTAGCACTCGGAATTCTTTGGCGCAGAAGGAATCAGAAGACCAAAACTATCTTAGACATCAATGTACACAATCATGAAGTTGGGCTTGTCCGCTTAGGCAACTTGAGAAACTTTACTTTCAAAGAGCTCCAATTAGCAACAGACCATTTTAGTTCCAAGAATATACTTGGGGCTGGAGGGTTTGGTAATGTGTACAAAGGAAAGCTAGGAGATGGGACTATGGTGGCAGTCAAACGGCTAAAAGATGTAACAGGTACTACTGGAGAGTCTCAGTTTCGCACAGAGTTGGAGATGATTAGTCTTGCTGTTCATCGTAATTTGCTTCGATTAATTGGTTATTGTGCCACTTCTCACGAGAGGCTCTTGGTGTATCCATACATGTCAAATGGCAGTGTAGCTTCCAGGCTCAGAGGTAAACCAGCCTTGGACTGGAACACGAGGAAGAGAATAGCAATTGGAGCTGCAAGAGGTCTGCTGTACCTCCATGAGCAATGTGATCCTAAGATAATCCATAGAGATGTTAAGGCAGCTAATGTGCTTCTGGACGACTACTGCGAAGCTGTAGTTGGTGATTTTGGACTTGCAAAGCTTCTTGACCATGCTGATTCTCATGTGACCACTGCTGTTCGTGGCACCGTTGGGCACATCGCTCCTGAGTATCTTTCAACTGGCCAATCTTCTGAGAAAACTGACGTGTTTGGATTTGGCATTCTGTTGATAGAGCTGATTACTGGTATGAGAGCTCTTGAATTTGGGAAAACAATTAACCAAAAAGGCGCCATGCTTGAGTGGGTAAAAAAGATACAACAGGAAAAGAAGGTGGAATTGCTTGTGGACAGAGAGCTAGGCAACAACTATGATCAGATTGAAGTTGGGGAAATGCTGCAAGTGGCTCTTCTTTGCACTCAGTATTTACCCGCTCATCGTCCCAAGATGTCGGAGGTGGTCCGAATGCTTGAAGGTGATGGCCTTGTTGAGAAATGGGCTGCTGCCCACACTCATAATGACTTACATGTCAACCTTTTTCATTCACGAAACAGCTGCAAAAGTACATACAACCCCACAAATGTATTGAAGAATAATGGTAATGAACGAGAACATTCAAGCATGTTAAGTTTAACAATGGATGACGACGATGACGAGCGATCTCTAGACTCCTATGCCATGGAACTCTCCGGTCCAAGATAG 1920 44.9 MLLPKLFCFIILSSAFLCLSYEPRNPEVEALINVKMALNDPHGVLSNWDEDSVDPCSWAMITCSPENLVIGLGAPSQSLSGSLAGAIGNLTNLRQVLLQNNNISGPIPIELGTLPLLQTLDLSNNRFSGPIPTSFAQLNGLRYLRLNNNSLSGPFPLSLAKIPQLAFLDLSFNNLSGPVPVFSARTFNVVGNPMICGSSPNEGCSGSANAVPLSFSLESSPGRLRSKRIAVALGVSLSCAFLILLALGILWRRRNQKTKTILDINVHNHEVGLVRLGNLRNFTFKELQLATDHFSSKNILGAGGFGNVYKGKLGDGTMVAVKRLKDVTGTTGESQFRTELEMISLAVHRNLLRLIGYCATSHERLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLIELITGMRALEFGKTINQKGAMLEWVKKIQQEKKVELLVDRELGNNYDQIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLVEKWAAAHTHNDLHVNLFHSRNSCKSTYNPTNVLKNNGNEREHSSMLSLTMDDDDDERSLDSYAMELSGPR* 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16062733 16068068 + CsaV3_1G029270.1 Csa01g01919 516416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01919 639 ProSitePatterns Protein kinases ATP-binding region signature. 300 322 IPR017441 GO:0005524
Csa01g01919 639 SUPERFAMILY Protein kinase-like (PK-like) 273 564 IPR011009 -
Csa01g01919 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Csa01g01919 639 Gene3D Phosphorylase Kinase; domain 1 264 370 - -
Csa01g01919 639 Gene3D Transferase(Phosphotransferase) domain 1 371 582 - -
Csa01g01919 639 Pfam Leucine rich repeat 116 175 IPR001611 GO:0005515
Csa01g01919 639 SMART serkin_6 294 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01919 639 Gene3D Ribonuclease Inhibitor 24 206 IPR032675 -
Csa01g01919 639 MobiDBLite consensus disorder prediction 617 639 - -
Csa01g01919 639 SUPERFAMILY L domain-like 25 188 - -
Csa01g01919 639 CDD TM_EGFR-like 226 259 - -
Csa01g01919 639 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 639 - -
Csa01g01919 639 ProSiteProfiles Protein kinase domain profile. 294 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01919 639 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Csa01g01919 639 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 639 - -
Csa01g01919 639 Pfam Protein tyrosine and serine/threonine kinase 297 563 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01919 Csa-Chr1:16062733 Csa05g02551 Csa-Chr5:26917973 0 dispersed
Csa01g01919 Csa-Chr1:16062733 Csa05g03065 Csa-Chr5:30756982 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77813 PF07714 PK_Tyr_Ser-Thr 2.20E-42 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01919 - - csv:101218629 1237.63