Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01932 ATGGGTCGGTGGCATCTTGAGAATTATAAGCCTGCATTGGCTATGATGGGTTTACAATGTATTTATGCTGTTCTTGCCATCTTTAGCCGAGCCGCTTTGGTCCATGGCATGAGCCCTAGAGTCTTTGTTGTTTATAGAAATGCCATTGCCACTCTAACCATGGCCCCTGCTCTTTATTTCTCAACAAGGATAAGTGGCAACAGGATTTTCATCGGATTCAGAGGCCTCTCTCTTATATTTGTCACTGCTCTTATTGGAGTAACTGGCAACCAAAATGCTTATTTTGAAGGTCTTTATTTATCCTCTTCATCAGCTGCAAGTGCTATAGTTAATTTAATTCCTGCTATCACTTTCGTTATGGCAGTCATTGCAGGATCGGAGAAAATAAAAGCAAAAAGTTGGAGAACCGTAGCGAAAATAGTAGGAACAATAGTATGCGTAGGTGGAGCTGCTTCAATGGCGTTAATAAAAGGCCCTAAATTACTAAACCCGCAAATTTTGCCTAAGAATATTAGCTTTCTCAATATACTCGGAGCCGTCGAACCCGAACAAGACACGTGGTTTCTTGGCTGTGTTCTTCTCTTTGTCAGCAGTTGTTTCTGGGCATTCTGGATCATCATGCTGGTTCCAATTTCAAGACATTGTCCAGACCCAATAATTTCTTGCACATGGCTGTTATTCGTTGCCACCATATTATCAGTCTTCTTCACTGTTCTTGTAGAAGACAACACAAAAGTCTGGAATCTTCCTTCTTTATTACAATTCGCTACTTGTATATACGCCGGAACAAGCTCAGCACTGTCATTTTTCGTACAATCTTGGTGTGTTTCAAAAAGAGGCCCTCTTTTCACTGCTTTATTCAACCCGCTTTGTACAGTCATCACAACATTCGTTTCTTCTTTGTTCTTACACGAACAACTATACATGGGAAGCTTAATGGGTGCTATCGCAGTGATAATTGGTTTATATATTGTGTTATGGGGTAAAGCTAAAGATGTTGATCAAGACATGAAACGACGACGTGGAGAAGAAGTTGATGATAGTTCAGAGAAAAAGGATATAGAACAGCCGCTGCTATGTGATGAGACAATCAAATATGACAAATTTTGA 1110 40.18 MGRWHLENYKPALAMMGLQCIYAVLAIFSRAALVHGMSPRVFVVYRNAIATLTMAPALYFSTRISGNRIFIGFRGLSLIFVTALIGVTGNQNAYFEGLYLSSSSAASAIVNLIPAITFVMAVIAGSEKIKAKSWRTVAKIVGTIVCVGGAASMALIKGPKLLNPQILPKNISFLNILGAVEPEQDTWFLGCVLLFVSSCFWAFWIIMLVPISRHCPDPIISCTWLLFVATILSVFFTVLVEDNTKVWNLPSLLQFATCIYAGTSSALSFFVQSWCVSKRGPLFTALFNPLCTVITTFVSSLFLHEQLYMGSLMGAIAVIIGLYIVLWGKAKDVDQDMKRRRGEEVDDSSEKKDIEQPLLCDETIKYDKF* 370
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 16213438 16217075 - CsaV3_1G029400.1 Csa01g01932 516429
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01932 369 PANTHER WAT1-RELATED PROTEIN 11 350 - -
Csa01g01932 369 SUPERFAMILY Multidrug resistance efflux transporter EmrE 45 147 - -
Csa01g01932 369 SUPERFAMILY Multidrug resistance efflux transporter EmrE 224 330 - -
Csa01g01932 369 PANTHER WAT1-RELATED PROTEIN 11 350 IPR030184 GO:0016021|GO:0022857
Csa01g01932 369 Pfam EamA-like transporter family 189 326 IPR000620 GO:0016020|GO:0016021
Csa01g01932 369 Pfam EamA-like transporter family 12 145 IPR000620 GO:0016020|GO:0016021
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Csa01g01932 Csa02g00579 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01932 Csa-Chr1:16213438 Csa05g00146 Csa-Chr5:801108 9.79E-63 dispersed
Csa01g01932 Csa-Chr1:16213438 Csa02g00579 Csa-Chr2:4118501 1.10E-117 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01932 - - csv:101221252 727.243