Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01942 ATGGGCATGGAATTGAAGAAGGAAAAGCTTGTTAGGTTTTATTCTGATCACAAAAAACATAAGAAATCCGCCATTGGAAGCAGCAATGAAGCAGTGCAACTTGAGAAGTCACCGTCGAAATACTATATTCCCTCGTCAACGTCAACATTCTTAATACCTGAGAATGGACTAGGAGGAGGCAAAAGTAAATTGACCGAAACTTTTAAAACGGAGAAGTCTAAGGTGTTTCCAGAGGACCATGAACCATGGAGCAAAAGAATACTAGACCCTGGTAGCAAAATTGTTTTGAAATGGAACCGGGTGTTCATTTGCTCGTGCTTACTGGCTCTCTTTGTTGACCCACTATATCTTTATTTGCCTGCTTTGAATGGGAATGGAGTATCCCAATGTGTAAGGACAGACTGGAAATTGCGAATTGTTGTGACCTGTTTCCGAACAGTTGCAGATTTTTTCTACCTTTTGCACATGATTATAAAGTTCAGAACAGCTTATGTTGCTCCTAGCTCTCGTGTTTTTGGGAGAGGTGAGCTTGTGATGGATCCAAAGATGATAGCAAAGAGGTATATTAGATCTGATTTTTTTGTCGATCTAATTGCCACCCTGCCTCTCCCTCAGTTTGTCATCTGGTTCATCATACCTGCAACAAGAAGTCGTCTAACCGATCATAAAAACAATGCACTTGCGCTTATTGTTCTTCTTCAATATATTCCAAGATTGTATTTGATTTTCCCACTAAGTTCAGAAATCATCAAAGCAAATGGTGTTGTTACAAAAACAGCATGGGCAGGAGCTGCTTATAATCTTCTACTTTATATGTTGGCCAGCCATGTTCTAGGTGCTACATGGTATTTGCTGTCAGTTGATAGATATACTTCGTGCTGGAAGTCATTTTGTATGAAGAAGGAATATAATCCTCTAGAGTGCAATCTAACATTTTTTGATTGCGATACATTTAACAGTAATGATCGCAAAACATGGGCAAACAGTACACTTGTTTTTGGAAAATGTGGCACTGATGGAGGAGACTTCAAGTATGGCATTTTTGAGAATGCAATGTCGAAGAATGTTGTCTCTTCAAACTTTATTGAAAAGTACTTCTATTGTTTGTGGTGGGGCTTGCAAAACCTGAGTTCATATGGACAAAACTTGGAAACAACGACATTCATTGGTGAGACATTGTTTGCTGTGCTCATTGCCATCTTAGGCCTTGTATTATTTGCCCATCTGATTGGGAATATGCAGACGTATCTGCAATCCCTTACTGTGAGGCTTGAAGAATGGAGACTAAAGCGAAGAGACACTGAAGAGTGGATGAGACATCGTCAACTCCCTGAAGACTTGAAACGACGAGTTCGACGTTTTGTACAATATAAGTGGGTGGCAACCAGAGGAGTTGATGAAGAAACCATCTTGCAGAGCTTGCCTGCTGATCTTCGACGTGATATTCAGTGCCACCTATGTCTAGATCTTGTCCGACGAGTTCCTTTCTTCGCACAGATGGATGATCAGCTACTTGATGCAATATGTGAACGCCTGGTCTCCTCCTTGAGCACTGAAGGTACTTATATTGTACGGGAGGGTGACCCGGTAACAGAGATGCTGTTCATTATTCGAGGCAGATTGGAGAGTTCTACCACAAATGGAGGCCGCTCTGGTTTCTTTAACTCCATAACATTACGTCCCGGGGACTTCTGTGGGGAGGAACTACTTTCTTGGGCCTTGCATCCAAAATCCACCACCAACTTGCCCTCCTCAACTAGAACAGTGAAGGCACTCAATGAAGTTGAAGCTTTTGCACTCCGTGCAGAAGATCTTAAATTTGTGGCCAACCAATTTAGACGTCTGCATAGTAAAAAATTGCAGCACACATTCCGCTTCTACTCTCATCATTGGAGAACATGGGCAGCTTGCTTTATTCAGGCTGCTTGGCGTCGCCATAAGAAAAGGATGATGGCAAAAGACCTCTTAATGAAGGAATCATTTACATTACCAGAACAAGTGGCTGATGAAACTACCCAAGGAGAGGAACAATTCTCTGTTGTTTCAAATCCTTCTCAGTCTAAAATGTATCTGGATGTAACCTTGCTGGCTTCAAGGTTTGCTGCAAACACAAGGAGAGGCGCCCAGAGAATGAAAGATGACTTGCCAAAATTACAAAAGCCCGATGAACCCGACTTTTCCATTGAGCCAGATAGATAA 2199 41.84 MGMELKKEKLVRFYSDHKKHKKSAIGSSNEAVQLEKSPSKYYIPSSTSTFLIPENGLGGGKSKLTETFKTEKSKVFPEDHEPWSKRILDPGSKIVLKWNRVFICSCLLALFVDPLYLYLPALNGNGVSQCVRTDWKLRIVVTCFRTVADFFYLLHMIIKFRTAYVAPSSRVFGRGELVMDPKMIAKRYIRSDFFVDLIATLPLPQFVIWFIIPATRSRLTDHKNNALALIVLLQYIPRLYLIFPLSSEIIKANGVVTKTAWAGAAYNLLLYMLASHVLGATWYLLSVDRYTSCWKSFCMKKEYNPLECNLTFFDCDTFNSNDRKTWANSTLVFGKCGTDGGDFKYGIFENAMSKNVVSSNFIEKYFYCLWWGLQNLSSYGQNLETTTFIGETLFAVLIAILGLVLFAHLIGNMQTYLQSLTVRLEEWRLKRRDTEEWMRHRQLPEDLKRRVRRFVQYKWVATRGVDEETILQSLPADLRRDIQCHLCLDLVRRVPFFAQMDDQLLDAICERLVSSLSTEGTYIVREGDPVTEMLFIIRGRLESSTTNGGRSGFFNSITLRPGDFCGEELLSWALHPKSTTNLPSSTRTVKALNEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRHKKRMMAKDLLMKESFTLPEQVADETTQGEEQFSVVSNPSQSKMYLDVTLLASRFAANTRRGAQRMKDDLPKLQKPDEPDFSIEPDR* 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16308637 16319341 + CsaV3_1G029500.1 Csa01g01942 516439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01942 732 CDD CAP_ED 496 627 IPR000595 -
Csa01g01942 732 Pfam Ion transport protein 98 423 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Csa01g01942 732 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 58 729 - -
Csa01g01942 732 PRINTS EAG/ELK/ERG potassium channel family signature 156 165 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa01g01942 732 PRINTS EAG/ELK/ERG potassium channel family signature 273 283 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa01g01942 732 PRINTS EAG/ELK/ERG potassium channel family signature 391 402 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa01g01942 732 PRINTS EAG/ELK/ERG potassium channel family signature 409 418 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa01g01942 732 PRINTS EAG/ELK/ERG potassium channel family signature 459 466 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa01g01942 732 Pfam Cyclic nucleotide-binding domain 519 607 IPR000595 -
Csa01g01942 732 Gene3D Jelly Rolls 494 614 IPR014710 -
Csa01g01942 732 Gene3D - 124 421 - -
Csa01g01942 732 SUPERFAMILY Voltage-gated potassium channels 90 418 - -
Csa01g01942 732 Gene3D Helix hairpin bin 424 487 - -
Csa01g01942 732 SUPERFAMILY cAMP-binding domain-like 426 618 IPR018490 -
Csa01g01942 732 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 58 729 - -
Csa01g01942 732 ProSiteProfiles cAMP/cGMP binding motif profile. 496 580 IPR000595 -
Csa01g01942 732 MobiDBLite consensus disorder prediction 706 732 - -
Csa01g01942 732 SMART cnmp_10 496 627 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00161 Csa-Chr1:1043898 Csa01g01942 Csa-Chr1:16308637 0 dispersed
Csa01g00504 Csa-Chr1:3351942 Csa01g01942 Csa-Chr1:16308637 2.73E-144 dispersed
Csa01g01942 Csa-Chr1:16308637 Csa03g04413 Csa-Chr3:38472710 0 dispersed
Csa05g03020 Csa-Chr5:30422601 Csa01g01942 Csa-Chr1:16308637 7.26E-131 dispersed
Csa01g01942 Csa-Chr1:16308637 Csa03g03918 Csa-Chr3:34344343 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01942 K05391 - csv:101218643 1489.17