Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01943 ATGTTGATAACATTCACAGAAGCTGTTGCACCTTCTTCTTCCCCCCTTTCCTTCACTCTCTCCACTCATTCCCTTACTAATTCTAACCGCTTTCCAAGACCTAGAACTTCACTCACCCCTGCTTCCTTCTCTGTTCCAGGCAAGCCCACTTCCACCAAATCCTGGAACCTTCGCCTCGTTTCCAACAGTTCTGAGAGCTCAGTTTTTGATCCCTTGGGCATCCGTCCTGATCTTTCTTCCGAATTTAGTAGTACATGGGAAAATTTTCTTGGCTATTTTGGCCAAACATTTAACAGTGCTTCAAGCACAAAAAAAGACAAGTCTCCGTCAGCTCGTGGATTGGCAGCTGCAATCGAAGACAGTTCCATTGACATAGGAGATTTCTTCAAAGGTCCGTTGCCTGGAAAATTCCTACAGCTGTTGGGCTATTTAGCTCTTTCAAGGCTTGGAATCTATATCCCTCTTGGTGGAGTGAACCGAGAGGCTTTTGTTGGGAACTTGGATCAGAACAGCTTATTGAGCACTTTAGATTCATTTTCTGGAGGAGGCATTGGTAGGCTAGGGATATGCTCCCTAGGCATTGTTCCCTTTATTAATGCACAAATTGTCTTCCAGCTTCTTGCTCAAATTTATCCAAAATTGCAAGACCTTCAGAAAAGAGAAGGTGAAGCAGGGCGAAAGAAAATTCTGCAATATACTCGATATGCCTCAGTTGGATTTGCAATCGTACAAGCAATTGGCCAAGTTCTATTCCTTCGCCCCTATGTTAATGATTTTAGTACAGAATGGGTGCTCTCTTCTGTTACTTTATTGACACTTGGCTCAGTCGTAACAACGTACATAGGGGAACGGATCACAGACCTAAAGCTAGGAAATGGGACATCTCTTTTAATATTCACCAGCATCATCTCCTATTTACCAGCATCCTTTGGAAGGACCACTGCACAGGCATTCCAGGATGGTAATTATGTTGGATTGGTTGCTATCATAATCTCCTTCTTTCTATTGGTACTTGGAATTGTATATGTTCAGGAAGCAGAAAGGAAAATCCCCCTCAATTATGCTTCAAGATACACAAGCAGAGGTGGAGGACTTCAGAAATCTGCTTACCTGCCCTTCAAGGTTAATAGTTCTGGTGTAATGCCAATCATTTTCTCGACATCAACGTTAGCCCTTCCAGGTACTCTGGCTCGCTTCACAGGGCTATCGGTCCTAAAGAAGGCTGCACTTGCTTTAAATCCAGGAGGTTCGTTCTATCTGCCAACCAACATCCTTTTGATAGCCTTCTTCAACTATTACTACACGTTCCTACAGTTGGATCCCGATGATGTGAGTGAGCAATTGAAGCGACAGGGTGCTTCAATTCCCCTCGTCCGCCCAGGAAAAAGTACAGCTTCATATCTGAAAGCGGTTCTAAGCCGGATTTCAGTACTTGGTTCAGCCTTCTTGGCAATCCTTGCTGCTGGTCCTGCTGTGATTGAACAGACAACACATTTAACAGCATTTCGAGGATTCGCAGGAACCTCTGTTCTTATTCTTGTTGGTTGTGCAACAGACACTGCCAGAAAGGTACAAGCTGAGATAATCTCCCAGAAGTACAAGAATATAGAGTTTTATGACATTGATAGGTATAATCCTTAA 1641 43.57 MLITFTEAVAPSSSPLSFTLSTHSLTNSNRFPRPRTSLTPASFSVPGKPTSTKSWNLRLVSNSSESSVFDPLGIRPDLSSEFSSTWENFLGYFGQTFNSASSTKKDKSPSARGLAAAIEDSSIDIGDFFKGPLPGKFLQLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQIYPKLQDLQKREGEAGRKKILQYTRYASVGFAIVQAIGQVLFLRPYVNDFSTEWVLSSVTLLTLGSVVTTYIGERITDLKLGNGTSLLIFTSIISYLPASFGRTTAQAFQDGNYVGLVAIIISFFLLVLGIVYVQEAERKIPLNYASRYTSRGGGLQKSAYLPFKVNSSGVMPIIFSTSTLALPGTLARFTGLSVLKKAALALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTASYLKAVLSRISVLGSAFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDRYNP* 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16313464 16319402 - CsaV3_1G029510.1 Csa01g01943 516440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01943 546 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 54 542 IPR002208 GO:0015031|GO:0016020
Csa01g01943 546 ProSitePatterns Protein secY signature 1. 188 207 IPR030659 -
Csa01g01943 546 Hamap Protein translocase subunit SecY [secY]. 125 537 IPR026593 -
Csa01g01943 546 TIGRFAM 3a0501s007: preprotein translocase, SecY subunit 136 533 IPR002208 GO:0015031|GO:0016020
Csa01g01943 546 Pfam SecY 189 520 IPR002208 GO:0015031|GO:0016020
Csa01g01943 546 ProSitePatterns Protein secY signature 2. 280 297 IPR030659 -
Csa01g01943 546 Gene3D SecY subunit domain 128 533 IPR023201 -
Csa01g01943 546 PRINTS Preprotein translocase SecY subunit signature 137 155 - -
Csa01g01943 546 PRINTS Preprotein translocase SecY subunit signature 187 207 - -
Csa01g01943 546 PRINTS Preprotein translocase SecY subunit signature 229 252 - -
Csa01g01943 546 PRINTS Preprotein translocase SecY subunit signature 261 286 - -
Csa01g01943 546 PRINTS Preprotein translocase SecY subunit signature 287 310 - -
Csa01g01943 546 PRINTS Preprotein translocase SecY subunit signature 378 397 - -
Csa01g01943 546 PRINTS Preprotein translocase SecY subunit signature 417 439 - -
Csa01g01943 546 PRINTS Preprotein translocase SecY subunit signature 472 490 - -
Csa01g01943 546 PRINTS Preprotein translocase SecY subunit signature 506 524 - -
Csa01g01943 546 PANTHER PREPROTEIN TRANSLOCASE SUBUNIT SCY1, CHLOROPLASTIC 54 542 - -
Csa01g01943 546 SUPERFAMILY Preprotein translocase SecY subunit 129 527 IPR023201 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01943 Csa-Chr1:16313464 Csa06g02323 Csa-Chr6:20853684 6.84E-38 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01943 K10956 - csv:101222431 1034.63