Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa01g01955 | ATGAAAGGGGAAGTACAATTGGAGTCATCAATTGGGCAAAACCCTAGTGATTCTGATCCTCTGCTCGAGAATCAGAACGGTTCATCATCCCATGGAACCTCTGATGAAATCAAGGATGAGGATACTGAAGCTGGTTCCATTCCTTGTTGTCGTATTTGCTTAGAGAGCGATGCCGAACCAGAAGATGAACTGATTTCTCCATGCATGTGCAAAGGCACACAGCAGTTTGTCCATCGATCTTGTCTTGATCATTGGCGCTCCGTTAAGGAAGGGTTTGCTTTCTCGCATTGCACAACTTGCAAAGCCCAATTTCACCTGAAAGTTTCCTTATTTGAGGACAACTCTTGGCGTAAAGTTAAATTCAGGCTTTTTGTGGCAAGAGATGTTCTCCTTGTATTTATAGCTGTACAAACTTTAATAGCGGCAATCGGTGGTTATGCATATATTATGGACAAAGACGGGGCATTTAGGAATTCTTTCAGTGATGGATGGGATCGTATTCTGTCTAAACATCCTATTCCATTTTATTATTGTATTGGGGTCCTAGCTTTCTTTGTTCTGCTCGGATTCTTCGGGCTCATACTACATTGTTCATCCCTGAATAGTAATGACCCAAGAGTTGCTGGGTGTCACAACTGTTGCTATGGATGGGGAATCTTGGATTGTTTCCCTGCATCAATGGAAGCCTGTTTTGCACTTGTTATCGTTTTCGTAGTTATCTTTGTAATCCTTGGCATAGCTTATGGCTTCCTTGCTGCTACTATGGCCATTCAGAGGATCTGGCAAAGACATTACCACATTCTCACAAAAAGGGAACTGACTAAAGAATATGTGGTGGAGGATCTTCATGGATGTTATACTCCTCCAAAATTGGAACCAGAACATGAACAGCACTTGAAAATGCTACAGCTTCTGTAA | 918 | 42.05 | MKGEVQLESSIGQNPSDSDPLLENQNGSSSHGTSDEIKDEDTEAGSIPCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLKVSLFEDNSWRKVKFRLFVARDVLLVFIAVQTLIAAIGGYAYIMDKDGAFRNSFSDGWDRILSKHPIPFYYCIGVLAFFVLLGFFGLILHCSSLNSNDPRVAGCHNCCYGWGILDCFPASMEACFALVIVFVVIFVILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLHGCYTPPKLEPEHEQHLKMLQLL* | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 16410662 | 16414045 | + | CsaV3_1G029630.1 | Csa01g01955 | 516452 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa01g01955 | 305 | Pfam | RING-variant domain | 50 | 100 | IPR011016 | GO:0008270 | |
| Csa01g01955 | 305 | CDD | RING_CH-C4HC3_MARCH | 50 | 101 | - | - | |
| Csa01g01955 | 305 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 1 | 305 | - | - | |
| Csa01g01955 | 305 | MobiDBLite | consensus disorder prediction | 7 | 32 | - | - | |
| Csa01g01955 | 305 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
| Csa01g01955 | 305 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 1 | 305 | - | - | |
| Csa01g01955 | 305 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 42 | 107 | IPR011016 | GO:0008270 | |
| Csa01g01955 | 305 | SUPERFAMILY | RING/U-box | 48 | 105 | - | - | |
| Csa01g01955 | 305 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 33 | 114 | IPR013083 | - | |
| Csa01g01955 | 305 | SMART | ringv_2 | 49 | 101 | IPR011016 | GO:0008270 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa01g01955 | Csa-Chr1:16410662 | Csa06g03191 | Csa-Chr6:27104140 | 2.49E-61 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa01g01955 | - | - | csv:101220313 | 629.787 |