Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01957 ATGGACACCCTTAGAAACAGAGGAGGTTTCAGGGTTTCTGTTTGTGGTCAAGAAGAGCTTGAGCAACTCTCCAGAGATGGTAGTCAGTATAGCCTTACTACTGGAATACTGCCTTCTCTTGGCGCTAGAAGCAATCGCAGAGTCAAGCTCCGGCGTTTTATTATTTCGCCTTATGACCGTCGATACAGGATTTGGGAGACTTTTCTCGTTGTTTTGGTGGTATATACTGCTTGGGTCTCACCGTTCGAGTTTGGATTCCTTAAGAAACCCCAATCGCCACTCTCCGTTACAGACAATGTGGTTAATGGATTTTTTGCTGTGGACATTGTTCTCACATTCTTTGTTGCTTACCTTGATAAAACTACCTATTTACTTGTTGATGAACCCAAGAAAATTGCTCTGAAGTATGCAAGGACATGGCTGATCTTTGATGTCATATCCACAATTCCTTCTGAACTTGCACAGAAGATTTCCCCTTCGCCTCTCCGTTCTTATGGATTATTCAACATGCTTCGTCTGTGGCGTCTTCGAAGAGTCAGTGCTCTTTTCTCCAGACTAGAAAAGGATAGGAACTATAATTACTTTTGGGTTCGATGCGCGAAACTCATTTGTGTTACTCTCTTTGCGGTTCACTGTGCCGCATGTTTTTATTATCTCCTTGCTGCTCGTTATCGTGACCCAAAAAATACATGGATTGGAGCATCCATGGAGAATTTTCTGGAAGAAAGTTTGTGGATTAGATATGTCACTTCCATTTATTGGTCTATCACTACTCTTACCACTGTTGGCTACGGCGATTTGCATCCTGTGAATACAAGGGAGATGATTTTTGACATCTTCTATATGCTTTTCAATCTTGGTTTGACAGCATACTTGATTGGAAATATGACCAACTTAGTTGTCCATGGGACCAGTAGAACTAGAAAATTCAGGGATACGATACAAGCTGCATCTAGTTTCGCCCATAGGAATCAACTTCCTCTCCGTTTACAAGACCAAATGCTTGCACATTTGTGTCTAAAGTTCAGAACTGACTCTGAGGGATTGCAGCAGCAAGAAACTCTTGATTCATTGCCTAAAGCCATCCGATCAAGCATTTCACATTATCTTTTCTATTCTCTAGTAGACAAGGTCTACTTGTTTCGCGGTGTTTCAAATGACCTACTTTTTCAGCTGGTGTCAGAAATGAAGGCAGAATATTTTCCTCCAAAAGAAGATGTAATTTTACAAAATGAAGCCCCAACAGACTTCTACATTCTTGTCACGGGTGCTGTGGATTTGCTAGTACTCAAGAATGGAGTTGAACAGCCTGTTGGAGAGGCTAAAACTGGTGATCTTTGTGGAGAGATTGGGGTGTTATGTTACAGGCCACAATTGTTTACTGTTCGTACAAAGCGATTGAGTCAGCTGCTGCGTCTAAATCGGACGGCTTTTCTGAATATTGTTCAATCCAATGTCGGAGATGGGACTATAATCATGAACAATCTTCTTCAGCACTTGAAGGACTTGAAAGACAAGGACCCCATCATGGAAGGAGTTTTGTTGGAGACAGAGAACATGCTAGCTAGAGGCAGAATGGACCTACCACTTAGTCTTTGTTTTGCAACACTTAGAGGAGATGATTTGCTTTTACACCAACTTTTGAAAAGAGGTCTCGATCCAAATGAATCAGACAATACCGGGAGGACTTCACTTCATATAGCAGCATCAAATGGAAATGAGAACTGTGTGCTTCTATTACTAGACTATGGAGCAGATCCCAATAGTAGAGATTCAGATGGGGTTGTACCATTATGGGATGCGATACTTGGTGGCCATGAGGCAGTAGCTCAGCTACTTATAGACAATGGTGCTAACCTTCGGTCAGGAGATGTCGGCCACTTTGCGTGTACTGCTGCAGAGCAAAATAAACTCCAGTTGCTCAAGGAGATTCACCGATATGGAGGTGACGTTACGAGTGCTAGGAACAACGGAACGACTGCTTTACATGTTGCTGTTTGTGAAGACAACATTGAGATCGTCAAGTTCCTTCTCAAACAAGGAGCTGATATTGACAAACCAGATGTCCATGGATGGACTCCGAGAGATCTAGCAGACCAACAAGGACACGAAGAAATTAAAAACCTCTTCCAAACAATAAAAGAGTCAAAAACTCAATCTGTTGTTGCAATTCCAGAGAAGCAGACTGGTATTCGCTTCCTTGGAAGATTTACAAGCGAGCCTATGATTCGCCCCCAACCTCAGGAAGCCAATGATGGTTCATGGCCGGGTCATTCTCGTCCCCGACGTAGGACTAACAACTTCCATAACTCATTGTTTGGTATCATGTCAGCAGCACAATCAGGGGAGAATGGGAACCCTTTTCCTGATAGCCAAACCAGTTTAGAGAACTCTGGAACCAACCCTGCAAGGGTGATTGTAAGCTGTCCAGAGATCGGCGAAGTTGGCGGGAAGTTGGTGCTGCTTCCGGAAAGTTACAACGAGCTGCTCGAGATTGGTTTGAAGAAATATGGAATTATGGCAACAAAGGTATTGAACAAAGATGGAGCTGCCATTGAAGATATAGAAGTCATTAGGGATGGTGATCATCTTGTTTTTGTCAGTGATGGAAGAACCACATAA 2622 42.87 MDTLRNRGGFRVSVCGQEELEQLSRDGSQYSLTTGILPSLGARSNRRVKLRRFIISPYDRRYRIWETFLVVLVVYTAWVSPFEFGFLKKPQSPLSVTDNVVNGFFAVDIVLTFFVAYLDKTTYLLVDEPKKIALKYARTWLIFDVISTIPSELAQKISPSPLRSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCAKLICVTLFAVHCAACFYYLLAARYRDPKNTWIGASMENFLEESLWIRYVTSIYWSITTLTTVGYGDLHPVNTREMIFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAHRNQLPLRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLVDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQPVGEAKTGDLCGEIGVLCYRPQLFTVRTKRLSQLLRLNRTAFLNIVQSNVGDGTIIMNNLLQHLKDLKDKDPIMEGVLLETENMLARGRMDLPLSLCFATLRGDDLLLHQLLKRGLDPNESDNTGRTSLHIAASNGNENCVLLLLDYGADPNSRDSDGVVPLWDAILGGHEAVAQLLIDNGANLRSGDVGHFACTAAEQNKLQLLKEIHRYGGDVTSARNNGTTALHVAVCEDNIEIVKFLLKQGADIDKPDVHGWTPRDLADQQGHEEIKNLFQTIKESKTQSVVAIPEKQTGIRFLGRFTSEPMIRPQPQEANDGSWPGHSRPRRRTNNFHNSLFGIMSAAQSGENGNPFPDSQTSLENSGTNPARVIVSCPEIGEVGGKLVLLPESYNELLEIGLKKYGIMATKVLNKDGAAIEDIEVIRDGDHLVFVSDGRTT* 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16418603 16424385 - CsaV3_1G029650.1 Csa01g01957 516454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01957 873 ProSiteProfiles Ankyrin repeat region circular profile. 593 624 - -
Csa01g01957 873 SUPERFAMILY Ankyrin repeat 531 710 IPR036770 -
Csa01g01957 873 CDD CAP_ED 380 485 IPR000595 -
Csa01g01957 873 Gene3D - 63 301 - -
Csa01g01957 873 SMART cnmp_10 380 497 IPR000595 -
Csa01g01957 873 Pfam Ankyrin repeats (3 copies) 632 705 IPR002110 GO:0005515
Csa01g01957 873 Pfam Ankyrin repeats (3 copies) 532 621 IPR002110 GO:0005515
Csa01g01957 873 ProSiteProfiles KHA domain profile. 804 873 IPR021789 -
Csa01g01957 873 PANTHER POTASSIUM CHANNEL AKT1 6 872 IPR045319 GO:0005249|GO:0006813
Csa01g01957 873 Gene3D - 528 712 IPR036770 -
Csa01g01957 873 PRINTS Ankyrin repeat signature 561 576 IPR002110 GO:0005515
Csa01g01957 873 PRINTS Ankyrin repeat signature 673 687 IPR002110 GO:0005515
Csa01g01957 873 ProSiteProfiles Ankyrin repeat profile. 657 689 IPR002110 GO:0005515
Csa01g01957 873 SUPERFAMILY cAMP-binding domain-like 305 500 IPR018490 -
Csa01g01957 873 SMART ANK_2a 527 556 IPR002110 GO:0005515
Csa01g01957 873 SMART ANK_2a 560 589 IPR002110 GO:0005515
Csa01g01957 873 SMART ANK_2a 657 686 IPR002110 GO:0005515
Csa01g01957 873 SMART ANK_2a 593 622 IPR002110 GO:0005515
Csa01g01957 873 PRINTS EAG/ELK/ERG potassium channel family signature 75 82 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa01g01957 873 PRINTS EAG/ELK/ERG potassium channel family signature 98 108 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa01g01957 873 PRINTS EAG/ELK/ERG potassium channel family signature 109 118 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa01g01957 873 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa01g01957 873 PRINTS EAG/ELK/ERG potassium channel family signature 274 285 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa01g01957 873 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa01g01957 873 ProSiteProfiles Ankyrin repeat profile. 593 625 IPR002110 GO:0005515
Csa01g01957 873 ProSiteProfiles Ankyrin repeat region circular profile. 657 688 - -
Csa01g01957 873 Pfam Ion transport protein 63 307 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Csa01g01957 873 ProSiteProfiles Ankyrin repeat profile. 560 592 IPR002110 GO:0005515
Csa01g01957 873 Pfam Cyclic nucleotide-binding domain 400 485 IPR000595 -
Csa01g01957 873 Gene3D Jelly Rolls 344 506 IPR014710 -
Csa01g01957 873 ProSiteProfiles cAMP/cGMP binding motif profile. 380 482 IPR000595 -
Csa01g01957 873 ProSiteProfiles Ankyrin repeat region circular profile. 560 591 - -
Csa01g01957 873 PANTHER K+ TRANSPORTER 1-RELATED 6 872 - -
Csa01g01957 873 MobiDBLite consensus disorder prediction 743 762 - -
Csa01g01957 873 SUPERFAMILY Voltage-gated potassium channels 57 301 - -
Csa01g01957 873 Pfam KHA, dimerisation domain of potassium ion channel 804 866 IPR021789 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01957 Csa-Chr1:16418603 Csa03g04352 Csa-Chr3:38013152 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01957 K21867 - csv:101220784 1737.24