Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01963 ATGTATTACCCATTTCTCAAGAGAGAAAAAATAATAATAATGAAGGAGGTGAAGATTGAATCTCCGGCATGGTCCGCCACGGTGGTGACGATTGTGGTGTTGTTGATCTTCATTATAACTGCGAAAGTTGGTTTGGTTTTATGGTGGAAACCAAAAAAAATAGAAAAACACTTTGATAGACAAGGAATTAAAGGCCCTCCTTATCGTTTCTTCATTGGTAATTTCAAAGAACTCGTTTCTTTGATGCTCGCTGCTTCTTCCCATCCAATGCCCAATTTCTCTCATAATATTCTCCCTCGAGTTCTCTCTTTTTATCATCATTGGAAGAAAATTTACGGTTCCACTTTTCTAATTTGGTTTGGACCTATTGTTCGAGTCGCTGTCTCTGACCCAGACATGATCCGAGAAATCTTCGCCACAAATTCCCACTTCTACGAGAAAAACGAAGCTCATCCTCTTGTTAAACAGCTTGAAGGCGATGGTCTCCTCACTCTCACTGGCCAAAAATGGGCTCTCCATCGCAAAATCATATCTCCCACTTTCCATGTGGATAATCTGAAATTGTTGATTCCGTTGGTGGAAGAGAGTGTGGTGGAAATGGTGGAGAAATGGTGGTCGATGGCGGAGAGTATGGACTCGGGTGAAGTGGAGATCGATGTTTACGATTGGTTCCAAACCCTAACGGAAGATGTTATTACTAAAACAGCATTTGGAAGTAGCTACGAAGATGGTAAAGCTATATTTAAGCTTCAAACTCAACAAATGATATTAGCTTCACAAGCTTTTCAAAAGGTCTTCATTCCTGGCTATAGATTTCTACCGACAAGAACGAATATAAATTCATGGAAATTAGACAGGGAAATAAAGAAATCATTGATGAAATTAATCGAGGGACGAAAAAGGAATTTAGAGAAAAAGAATTGGGGGATGAATGAAAAAAGACCAAAAGATTTGTTAGGGTTGATGATTCAAGCTTCTTTGTTAAACAACAACAACAATAATAATTCCTCCATTACTGTCCACGACATCGTTGAAGAGTGCAAAAGCTTCTTCTTTGCTGGCAAACAAACTACTTCCAATTTGCTGACGTGGACTACTGTCTTGCTGGCAATGCATCCACAGTGGCAAATCCAGGCACGTGACGAGGTCTTTAACGTCTGCGGTCCACGTGCCCTCCCTTCTAAACATGACGTCTCTAACTTTAAAATCCTAAGCATGATACTAAATGAATCCTTACGATTATACCCACCCACGGTGGCAACTATCCGACGTGCAAAGACTGACGTGGAGCTAGCGGGACGAATGATCCCACGCGGGACCGAGTTTTTGATCCCAATCATAGCCGTTCATCACGATCAAACCATATGGGGGAACGACGCAAGCGAGTTCAACCCAGGGCGGTTCTCTGAAGGAGTGAGCAAAGCCGCAAATCACCCCGCCGGGTTCATTCCATTTGGACTCGGTGTCCGTACATGCATTGGTCAAAATCTAGCCCTTTTGGAAGCAAAATTAACCCTCGCAATTATACTCCAACGCTTCACATTTCGTTTGGCTCCCACTTATCAACATGCACCCACGGTCCTGATGCTTCTTTATCCACAGTATGGGGCCCCCATTATTTTTCAGAAGATACCCATAAATTAA 1644 42.34 MYYPFLKREKIIIMKEVKIESPAWSATVVTIVVLLIFIITAKVGLVLWWKPKKIEKHFDRQGIKGPPYRFFIGNFKELVSLMLAASSHPMPNFSHNILPRVLSFYHHWKKIYGSTFLIWFGPIVRVAVSDPDMIREIFATNSHFYEKNEAHPLVKQLEGDGLLTLTGQKWALHRKIISPTFHVDNLKLLIPLVEESVVEMVEKWWSMAESMDSGEVEIDVYDWFQTLTEDVITKTAFGSSYEDGKAIFKLQTQQMILASQAFQKVFIPGYRFLPTRTNINSWKLDREIKKSLMKLIEGRKRNLEKKNWGMNEKRPKDLLGLMIQASLLNNNNNNNSSITVHDIVEECKSFFFAGKQTTSNLLTWTTVLLAMHPQWQIQARDEVFNVCGPRALPSKHDVSNFKILSMILNESLRLYPPTVATIRRAKTDVELAGRMIPRGTEFLIPIIAVHHDQTIWGNDASEFNPGRFSEGVSKAANHPAGFIPFGLGVRTCIGQNLALLEAKLTLAIILQRFTFRLAPTYQHAPTVLMLLYPQYGAPIIFQKIPIN* 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16501446 16504312 + CsaV3_1G029710.1 Csa01g01963 516460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01963 547 SUPERFAMILY Cytochrome P450 65 542 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g01963 547 PRINTS P450 superfamily signature 353 370 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g01963 547 PRINTS P450 superfamily signature 406 417 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g01963 547 PRINTS P450 superfamily signature 483 492 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g01963 547 PRINTS P450 superfamily signature 492 503 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g01963 547 PANTHER CYTOCHROMEA2 29 539 - -
Csa01g01963 547 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 485 494 IPR017972 GO:0005506|GO:0016705
Csa01g01963 547 PANTHER CYTOCHROME P450 FAMILY MEMBER 29 539 - -
Csa01g01963 547 Gene3D Cytochrome P450 47 543 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g01963 547 Pfam Cytochrome P450 102 525 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g01963 547 PRINTS E-class P450 group I signature 109 128 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g01963 547 PRINTS E-class P450 group I signature 227 245 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g01963 547 PRINTS E-class P450 group I signature 342 359 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g01963 547 PRINTS E-class P450 group I signature 362 388 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g01963 547 PRINTS E-class P450 group I signature 482 492 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g01963 547 PRINTS E-class P450 group I signature 492 515 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g01963 Csa02g00167 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01963 Csa-Chr1:16501446 Csa03g04190 Csa-Chr3:36743086 1.21E-145 dispersed
Csa04g02242 Csa-Chr4:23069281 Csa01g01963 Csa-Chr1:16501446 2.13E-133 transposed
Csa01g01963 Csa-Chr1:16501446 Csa02g00167 Csa-Chr2:1164961 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01963 K15639 - csv:101213466 1080.86