Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g01967 ATGGAGGATCAGAAAGCCAACATAATTTCTCTGTCCTTAATTCTCCTCCTCATCCTTCTCCTCATTCTCGCTCGAATTTTCCTCAAATTTTCCAAAGCTTTTTTCCTCATTTGCGGCATCGATGTCTCCCTCACCGTCGCTATCTTGGTCTACATGGTCATCCGACTACGCTTCACCCGCAGAAGAAAACAGCTCGAATCTCAGTTAGTTTCCGAAGGTCGAGAGCTTCGGATCGAGTATAGTTTCTTAAGAAAAGTCGCCGGAGTTCCCACCAAGTTCCGCTACAAAGAGCTCGAGGAAGCCACTGACTACTTCCGAGCCTTGATAGGCAAAGGATCCTCCGGTTCTGTCTTCAAAGGAATCCTCAAAGACGGCACTGCCGTAGCTGTCAAGCGGATCGAAGGTGAAAATCGAGGAGACAAGGAGTTTCGAGCGGAGGTATCCGCCATTGCTAGTGTTCAACATGTAAACCTCGTTCGTTTATTTGGTTACTCTACTAATTCATCTGGACCTCGATTTCTTGTTTACGAATTCGTACCCAACGGATCTTTAGATTGCTGGATTTTCCCTAAAAAACCTAGACACAAGAATCGAAATCGCCCCGGCGGTTGCTTAGCTTGGGATCTGAGATACAGTGTCGCCATTGATGTTGCTAAAGCCCTAGCTTACCTTCACCATGATTGCCGATCCAGAATCTTACACCTCGATGTGAAACCAGAAAACATCCTTTTAGATGAAAATTACAGAGCAATCGTTTCGGATTTTGGCCTATCGAAGCTGATGGGAAAAGACGAGAGCCGAATAATGATATCGATGAGAGGAACGAGGGGATATTTAGCTCCGGAATGGCTATTGGAGAACGGGATTTCAGAGAAATCGGATGTATACAGCTACGGAATGGTTCTTCTGGAATTAGTCGGAGGTCAGAGAAACGTGAGCGTAGTTGAAAATGGAGAAGGCAGATCTAAGAAGAAATGGCAATATTTTCCTCGAATTGTGAGTGCGAAGATGAAGGAAGGGAAATTAATGGAAGCTGTGGATCAACGGCTGCTGGAAACGGGGGCGATCGACGAGAGAGAGGTACGGAAACTGGTTTGTGTGGGTTTATGGTGTATACAAGAACAGGCGAAGCTGCGACCAACGATGGCGATGGTGGTGGATATGCTTGAAGGCCGCGTCGCGGTGGAGGAGCCGCCGGATACGGAAATGCTCGTCGTTGATTTGTTGTCGATTGACGAAGAGATGATGAATAGTCAGGAGATACCAAAGATTGTTCCGTTTAGAGAACGGATGAAGGATGGAAATGTTCCTTCGTCATCGTCGACGCCGTGTTCTTACGCATTCTCTATACTCTCCGCACGGTGA 1365 46.81 MEDQKANIISLSLILLLILLLILARIFLKFSKAFFLICGIDVSLTVAILVYMVIRLRFTRRRKQLESQLVSEGRELRIEYSFLRKVAGVPTKFRYKELEEATDYFRALIGKGSSGSVFKGILKDGTAVAVKRIEGENRGDKEFRAEVSAIASVQHVNLVRLFGYSTNSSGPRFLVYEFVPNGSLDCWIFPKKPRHKNRNRPGGCLAWDLRYSVAIDVAKALAYLHHDCRSRILHLDVKPENILLDENYRAIVSDFGLSKLMGKDESRIMISMRGTRGYLAPEWLLENGISEKSDVYSYGMVLLELVGGQRNVSVVENGEGRSKKKWQYFPRIVSAKMKEGKLMEAVDQRLLETGAIDEREVRKLVCVGLWCIQEQAKLRPTMAMVVDMLEGRVAVEEPPDTEMLVVDLLSIDEEMMNSQEIPKIVPFRERMKDGNVPSSSSTPCSYAFSILSAR* 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16532928 16535586 + CsaV3_1G029750.1 Csa01g01967 516464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g01967 454 PANTHER RECEPTOR-LIKE KINASE 1 454 - -
Csa01g01967 454 Gene3D Transferase(Phosphotransferase) domain 1 179 404 - -
Csa01g01967 454 SUPERFAMILY Protein kinase-like (PK-like) 85 390 IPR011009 -
Csa01g01967 454 Pfam Protein kinase domain 108 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01967 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Csa01g01967 454 SMART serkin_6 103 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01967 454 ProSiteProfiles Protein kinase domain profile. 103 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g01967 454 Gene3D Phosphorylase Kinase; domain 1 67 178 - -
Csa01g01967 454 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Csa01g01967 454 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 1 454 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01967 Csa-Chr1:16532928 Csa03g04335 Csa-Chr3:37882559 1.06E-97 dispersed
Csa01g01967 Csa-Chr1:16532928 Csa02g02391 Csa-Chr2:21183002 1.78E-101 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77815 PF00069 Pkinase 8.90E-43 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g01967 - - csv:101211041 868.611