Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g02004 | ATGAATACCGATCCTACCATTGCAGCTGGGTTATTGAGGCTTCATTTTCACGACTGTTTTGTGCAGAGTAAAGGGCCAAGTTGGTCAGTGCCCACAGGAAGAAGAGATGGAAGAGTTTCTTCAAAATCCGAAGCCCAAAACTTACCTTCTCCACTCGAGTCCATTGCTGTCCACAAGAAAAAATTTGCAGAAAAGGGCCTTGATGAACAAGACCTCCTCACCTTACTCGGGGCACACACGATTGGACAAACAGATTGCTTGTTCTTCAGATATCGTTTACACAACTTCACAACAACATGCAACTCAGACCCAACCATAAACCCATCATTCTTAACAGAGTTGAAAGAACTTTGCCCCAATGATGGAGATGCAACCAAAAGGGTGGCATTGGACAAAGACAGCCAGTTCAAATTTGATCTTAGTTTCTTCAACAACATTAAAGATGGAAATGGAGTTTTGGAGTCAGACCAAAGGCTTTGGAATGATGATTCAACTAGAAGTATTATCCAAAAGTACATCAGCCCTTTAAGAGGACTTTTGGGGTTAAGATTTGACTACAACTTTCGGAAGTCCATGATTAAAATGAGTAGCATTGAGGTTAAGACTGGTATGCAAGTAGAGATCAGGAGAAAATGTTCGAGATTTAATTAA | 651 | 40.86 | MNTDPTIAAGLLRLHFHDCFVQSKGPSWSVPTGRRDGRVSSKSEAQNLPSPLESIAVHKKKFAEKGLDEQDLLTLLGAHTIGQTDCLFFRYRLHNFTTTCNSDPTINPSFLTELKELCPNDGDATKRVALDKDSQFKFDLSFFNNIKDGNGVLESDQRLWNDDSTRSIIQKYISPLRGLLGLRFDYNFRKSMIKMSSIEVKTGMQVEIRRKCSRFN* | 217 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 16873513 | 16879595 | - | CsaV3_1G030120.1 | Csa01g02004 | 516501 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g02004 | 216 | Gene3D | Peroxidase, domain 2 | 49 | 195 | - | - | |
Csa01g02004 | 216 | PRINTS | Haem peroxidase superfamily signature | 131 | 146 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g02004 | 216 | PRINTS | Haem peroxidase superfamily signature | 8 | 22 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g02004 | 216 | PRINTS | Haem peroxidase superfamily signature | 67 | 84 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g02004 | 216 | Gene3D | - | 1 | 23 | - | - | |
Csa01g02004 | 216 | ProSiteProfiles | Plant heme peroxidase family profile. | 9 | 216 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g02004 | 216 | Gene3D | - | 24 | 216 | - | - | |
Csa01g02004 | 216 | SUPERFAMILY | Heme-dependent peroxidases | 3 | 216 | IPR010255 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g02004 | 216 | MobiDBLite | consensus disorder prediction | 26 | 47 | - | - | |
Csa01g02004 | 216 | PRINTS | Plant peroxidase signature | 70 | 82 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g02004 | 216 | PRINTS | Plant peroxidase signature | 129 | 144 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g02004 | 216 | PRINTS | Plant peroxidase signature | 190 | 203 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g02004 | 216 | PRINTS | Plant peroxidase signature | 24 | 39 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g02004 | 216 | PRINTS | Plant peroxidase signature | 145 | 162 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g02004 | 216 | PANTHER | PEROXIDASE | 2 | 23 | - | - | |
Csa01g02004 | 216 | Pfam | Peroxidase | 23 | 172 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g02004 | 216 | PANTHER | PEROXIDASE 25-RELATED | 2 | 23 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Csa01g02004 | 216 | PANTHER | PEROXIDASE | 23 | 214 | - | - | |
Csa01g02004 | 216 | ProSitePatterns | Peroxidases active site signature. | 8 | 19 | IPR019794 | GO:0004601 | |
Csa01g02004 | 216 | PANTHER | PEROXIDASE 25-RELATED | 23 | 214 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02004 | Csa-Chr1:16873513 | Csa07g00538 | Csa-Chr7:3952110 | 6.63E-83 | dispersed | |
Csa01g02004 | Csa-Chr1:16873513 | Csa01g02009 | Csa-Chr1:16920108 | 2.02E-06 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g02004 | K00430 | - | csv:101221881 | 399.053 |