Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02004 ATGAATACCGATCCTACCATTGCAGCTGGGTTATTGAGGCTTCATTTTCACGACTGTTTTGTGCAGAGTAAAGGGCCAAGTTGGTCAGTGCCCACAGGAAGAAGAGATGGAAGAGTTTCTTCAAAATCCGAAGCCCAAAACTTACCTTCTCCACTCGAGTCCATTGCTGTCCACAAGAAAAAATTTGCAGAAAAGGGCCTTGATGAACAAGACCTCCTCACCTTACTCGGGGCACACACGATTGGACAAACAGATTGCTTGTTCTTCAGATATCGTTTACACAACTTCACAACAACATGCAACTCAGACCCAACCATAAACCCATCATTCTTAACAGAGTTGAAAGAACTTTGCCCCAATGATGGAGATGCAACCAAAAGGGTGGCATTGGACAAAGACAGCCAGTTCAAATTTGATCTTAGTTTCTTCAACAACATTAAAGATGGAAATGGAGTTTTGGAGTCAGACCAAAGGCTTTGGAATGATGATTCAACTAGAAGTATTATCCAAAAGTACATCAGCCCTTTAAGAGGACTTTTGGGGTTAAGATTTGACTACAACTTTCGGAAGTCCATGATTAAAATGAGTAGCATTGAGGTTAAGACTGGTATGCAAGTAGAGATCAGGAGAAAATGTTCGAGATTTAATTAA 651 40.86 MNTDPTIAAGLLRLHFHDCFVQSKGPSWSVPTGRRDGRVSSKSEAQNLPSPLESIAVHKKKFAEKGLDEQDLLTLLGAHTIGQTDCLFFRYRLHNFTTTCNSDPTINPSFLTELKELCPNDGDATKRVALDKDSQFKFDLSFFNNIKDGNGVLESDQRLWNDDSTRSIIQKYISPLRGLLGLRFDYNFRKSMIKMSSIEVKTGMQVEIRRKCSRFN* 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16873513 16879595 - CsaV3_1G030120.1 Csa01g02004 516501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02004 216 Gene3D Peroxidase, domain 2 49 195 - -
Csa01g02004 216 PRINTS Haem peroxidase superfamily signature 131 146 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g02004 216 PRINTS Haem peroxidase superfamily signature 8 22 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g02004 216 PRINTS Haem peroxidase superfamily signature 67 84 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g02004 216 Gene3D - 1 23 - -
Csa01g02004 216 ProSiteProfiles Plant heme peroxidase family profile. 9 216 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g02004 216 Gene3D - 24 216 - -
Csa01g02004 216 SUPERFAMILY Heme-dependent peroxidases 3 216 IPR010255 GO:0004601|GO:0006979|GO:0020037
Csa01g02004 216 MobiDBLite consensus disorder prediction 26 47 - -
Csa01g02004 216 PRINTS Plant peroxidase signature 70 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g02004 216 PRINTS Plant peroxidase signature 129 144 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g02004 216 PRINTS Plant peroxidase signature 190 203 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g02004 216 PRINTS Plant peroxidase signature 24 39 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g02004 216 PRINTS Plant peroxidase signature 145 162 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g02004 216 PANTHER PEROXIDASE 2 23 - -
Csa01g02004 216 Pfam Peroxidase 23 172 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa01g02004 216 PANTHER PEROXIDASE 25-RELATED 2 23 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa01g02004 216 PANTHER PEROXIDASE 23 214 - -
Csa01g02004 216 ProSitePatterns Peroxidases active site signature. 8 19 IPR019794 GO:0004601
Csa01g02004 216 PANTHER PEROXIDASE 25-RELATED 23 214 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02004 Csa-Chr1:16873513 Csa07g00538 Csa-Chr7:3952110 6.63E-83 dispersed
Csa01g02004 Csa-Chr1:16873513 Csa01g02009 Csa-Chr1:16920108 2.02E-06 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02004 K00430 - csv:101221881 399.053