Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02012 ATGGCTCTGCTTATGAAGAGGAGGATATGGCTTGGGACGTTTGAGACAGCGGAGGAAGCGGCCAAAGCGTACGACCAAGCTGCGGTTTTGATAAGTGGTCGGAACGCCAAAACCAATTTCCCTACTTCTTCTTCTTCCAATGGAGAGACTATCAACAATATTGTTACAACAGCCAAGGATTCACCAAAGGGTTTGTCTGAAATATTACAAGCTAAGCTCAAGAAATGCTGCCGTACTCCATCACGGTCGATGACATGCTTGAGGCTCGACACTGAGAATTCCAACATTGGTGTTTGGCAGAAACGTGCTGGGCAACAGTCGACATCCAACTGGGTTATGACGGTCGAGCTAGGAAACAAGAAGAGGGTAAGTAATGAGAACGAGAGCGAGAACGATAATAATGCAGATTCTCATATGATGGCTGACGTTGCTTCCGATCATCAGTCTCCAGTTGTGGAAGTGGTGGAAGTGGCGGAGATTCCGTCGGAGTTGGATGAAGAAGAGAAAATGTTAGCATTGCAAATGGTAGAGGAACTGCTTTACATCAACTTTGATCCTGCTGAGCCATTTGAGATTCAACAAGGAAAGGATATTAATTATCTTTAG 606 45.21 MALLMKRRIWLGTFETAEEAAKAYDQAAVLISGRNAKTNFPTSSSSNGETINNIVTTAKDSPKGLSEILQAKLKKCCRTPSRSMTCLRLDTENSNIGVWQKRAGQQSTSNWVMTVELGNKKRVSNENESENDNNADSHMMADVASDHQSPVVEVVEVAEIPSELDEEEKMLALQMVEELLYINFDPAEPFEIQQGKDINYL* 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16960665 16964821 - CsaV3_1G030200.1 Csa01g02012 516509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02012 201 Gene3D AP2/ERF domain 4 43 IPR036955 GO:0003700|GO:0006355
Csa01g02012 201 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 185 - -
Csa01g02012 201 SUPERFAMILY DNA-binding domain 6 43 IPR016177 GO:0003677
Csa01g02012 201 CDD AP2 6 43 IPR001471 GO:0003700|GO:0006355
Csa01g02012 201 Pfam AP2 domain 6 28 IPR001471 GO:0003700|GO:0006355
Csa01g02012 201 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 4 185 - -
Csa01g02012 201 ProSiteProfiles AP2/ERF domain profile. 1 41 IPR001471 GO:0003700|GO:0006355
Csa01g02012 201 SMART rav1_2 6 47 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02012 Csa02g00191 CCT
Csa01g02012 Csa02g00191 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02012 Csa-Chr1:16960665 Csa03g04338 Csa-Chr3:37921638 7.70E-54 dispersed
Csa01g02012 Csa-Chr1:16960665 Csa02g00191 Csa-Chr2:1316777 1.14E-60 wgd
Csa01g02012 Csa-Chr1:16960665 Csa04g00152 Csa-Chr4:856671 6.86E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30747 PF00847 AP2 1.80E-05 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02012 - - csv:101206565 375.941