Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02020 ATGAGGTGTTGGCTAGCCGGACAAAGATATATATTATTCTTGAGTTTGTCTCAGGAGGTTCTTCAAAAGAAGCTCCCAGAAATTGAGTCTAGACGATACTTTCATCAGCTGATAGATGCAGTTGCTCATTGTCACAGCAAGGGTGTGTACCACAGGGACCTTAAGCCTGAAAACCTTCTTCTTGATGATGATGGAAATCTGAAAGTTTCCGACTTTGGACTGAGTGCACTGTCTCAAAAAGGTGTTGACCTCCTTCACACGACATGTGGAACTCCTAATTATGTTGCACCCGAGGTGCTTGGTGGTCAGGGTTATGATGGTGCAGCTGCAGATATATGGTCATGTGGAGTCATCCTCTATGTACTAATGGCTGGCTATCTTCCATTTTCAGAGATGGACCTTCCCACCCTAAACATGAAGATAAATGCAGCAGAGTATTCCTGTCCCTATTGGTTTTCACCTGGTGCAAAGTCCTTGATACAGAAGATCCTTGATCCAAATCCTAAAGCTCGAATTCGAATTGAAGAAATTAGAAAAGATCCATGGTTCAGAAGAAACTACATCCCTGCTAAACTTGGAGAAGATGAGGAAGTAAACTTAGATGATGTTCGGGCTGTTTTTGATGACATTGAGGATGAATATGTAGCCGATCAAACAGAAAAAAGTGATGATGGTCCTTTGATAATGAATGCATTTGAGATGATAACATTATCTCAAGGATTAAATCTGTCACCACTATTTGATCGGCGACAGGACTATATAAAGCGGCAAACACGTTTTGTTTCTCGTAAACCTGCTAGCTTTATAATGTCTAGCATTGAAGCAGTAGCAGAAGCAATGGGATTAAATGTCCAGACACGTAATTTCAAGACAAGGTTGGAAAGAAGGACCGGATACAGGGTTGCACAGTTTGCCGCTGTGCTGGAGATTTATGAGGTGGCACCATCCCTTTTTATGGTGGATGTCCGCAAAGCTGCCGGAGATACTCTAGAATATCACAAGTTCTACAAGAATTTCTGTGGTAAGCTAGAAAACATAATCTGGAAACCATCTGAGAGTGTGGGAAACTGA 1071 41.92 MRCWLAGQRYILFLSLSQEVLQKKLPEIESRRYFHQLIDAVAHCHSKGVYHRDLKPENLLLDDDGNLKVSDFGLSALSQKGVDLLHTTCGTPNYVAPEVLGGQGYDGAAADIWSCGVILYVLMAGYLPFSEMDLPTLNMKINAAEYSCPYWFSPGAKSLIQKILDPNPKARIRIEEIRKDPWFRRNYIPAKLGEDEEVNLDDVRAVFDDIEDEYVADQTEKSDDGPLIMNAFEMITLSQGLNLSPLFDRRQDYIKRQTRFVSRKPASFIMSSIEAVAEAMGLNVQTRNFKTRLERRTGYRVAQFAAVLEIYEVAPSLFMVDVRKAAGDTLEYHKFYKNFCGKLENIIWKPSESVGN* 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17063868 17069533 - CsaV3_1G030280.1 Csa01g02020 516517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02020 356 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 20 352 - -
Csa01g02020 356 Gene3D Transferase(Phosphotransferase) domain 1 13 191 - -
Csa01g02020 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 49 61 IPR008271 GO:0004672|GO:0006468
Csa01g02020 356 Pfam NAF domain 226 285 IPR004041 GO:0007165
Csa01g02020 356 Gene3D Kinase associated domain 1, KA1 223 349 - -
Csa01g02020 356 CDD CIPK_C 230 340 - -
Csa01g02020 356 ProSiteProfiles Protein kinase domain profile. 1 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02020 356 SMART serkin_6 1 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02020 356 ProSiteProfiles NAF domain profile. 224 248 IPR018451 GO:0007165
Csa01g02020 356 PANTHER - 20 352 - -
Csa01g02020 356 SUPERFAMILY Protein kinase-like (PK-like) 21 209 IPR011009 -
Csa01g02020 356 Pfam Protein kinase domain 22 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02020 Csa-Chr1:17063868 Csa02g02229 Csa-Chr2:20005697 1.62E-155 dispersed
Csa01g02020 Csa-Chr1:17063868 Csa01g01874 Csa-Chr1:15751776 4.97E-99 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77816 PF00069 Pkinase 2.10E-45 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02020 - - csv:101203676 684.485