Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02026 ATGGCCACCACTTGCCTCGATATTGCACCTGAACAACTTTGCTACATCCCTTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGTTTGTTTGACATTGTGACAGTCCGATGTGGGCACTGCACAAATTTGTGGTCCGTTAATATGGCTGCTGCATTTCACTCTCTTTCTTGGCAAGATGTTCAGGTTCCAAGTTACAACTTATACGGTTGTAATGGAGCTGATTTTCAAGGAGATTTTGGATCATCATCCAAATGTAACAACAATGTTAATAAGATGGAAATTCGAGTACCCACTACAATTCCAGCAGAGGAGAGGGTTGTGAATCGACCTCCCGAGAAAAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATCAAAGCAAGTAATCCTGAGATTAGCCATAGGGAAGCATTCAGTACGGCAGCTAAAAACTGGGCACATTTTCCTCGTATTCACTTTGGTCTGATGTTGGAAACCAACAATCAAGTGAAGCTAGATGATGGTTCTGAGCGTTTAATGCCAAGGGCTGCACTATTAAACAAATGA 582 41.75 MATTCLDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFHSLSWQDVQVPSYNLYGCNGADFQGDFGSSSKCNNNVNKMEIRVPTTIPAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNQVKLDDGSERLMPRAALLNK* 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17106850 17110652 - CsaV3_1G030340.1 Csa01g02026 516523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02026 193 SUPERFAMILY HMG-box 103 160 IPR036910 -
Csa01g02026 193 Pfam YABBY protein 10 167 IPR006780 GO:0007275
Csa01g02026 193 PANTHER AXIAL REGULATOR YABBY 5 4 183 - -
Csa01g02026 193 Gene3D High mobility group box domain 107 162 IPR036910 -
Csa01g02026 193 PANTHER PROTEIN YABBY 6-RELATED 4 183 IPR006780 GO:0007275
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02026 Csa-Chr1:17106850 Csa06g02479 Csa-Chr6:22073762 1.05E-59 dispersed
Csa01g02026 Csa-Chr1:17106850 Csa02g00197 Csa-Chr2:1351623 2.93E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30748 PF04690 YABBY 9.00E-70 CL0114 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02026 K25796 - csv:101215951 404.06