Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02038 ATGGAGAACGATTCTACAATTTTAAACTCATCTCCGCCGCCATCGCCGTCATCATCTGGCAGTTTATCACCACCATCCTCCTCATCGGCTGTCGTCGAATCGAACCGGAAACGACTCAAACGGCCCAGGGAGAATAACAACAACAACAATAACAGCAAACACCCGGTCTTCCGTGGGGTCCGAATGAGGGCATGGGGAAAATGGGTTTCCGAAATTCGTGAACCACGAAAAAAAAGCCGGATCTGGCTCGGTACTTTCTCCACCCCTGAAATGGCCGCACGTGCCCACGACGTCGCCGCCCTCACCATTAAAGGCACCTCCGCCATTCTCAACTTCCCTGAACTTGCCCACCAATTCCCCCGTCCGGCTTCCACTTCCCCTCGTGACGTTCAGGCCGCCGCCGCTAAAGCCGCCTCCATGGAAATCCCAACTCCCCCACTTTCTTCTTCTTCTTCTACTTCTACTTCTTCTTCCTCCTCTTCCTCTTCTTCTGCCTCTTTATGTCCTTCCTCGCCGGAGGAACTGACTGAAATCGTGGAGCTTCCGAGTTTAGGAACGAGTTATGAAACAGCGGAGTTAGGAAACGAGTTCGTGTTTGTGGACTCGGTGGAAGGTTGGCTTTATTCTTACCCATGGTATAACAGAGTGAGTAATGCAGAGCAAGTAGAGGAATTACAAGAGGATTATGGATTATTCTTCAAAGACCAGATTTTAATGGCGGATTATACCGATACTTTCTTATGGCAAAATTAA 753 49.54 MENDSTILNSSPPPSPSSSGSLSPPSSSSAVVESNRKRLKRPRENNNNNNNSKHPVFRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGTSAILNFPELAHQFPRPASTSPRDVQAAAAKAASMEIPTPPLSSSSSTSTSSSSSSSSSASLCPSSPEELTEIVELPSLGTSYETAELGNEFVFVDSVEGWLYSYPWYNRVSNAEQVEELQEDYGLFFKDQILMADYTDTFLWQN* 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17372663 17374010 - CsaV3_1G030460.1 Csa01g02038 516535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02038 250 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 249 - -
Csa01g02038 250 MobiDBLite consensus disorder prediction 1 33 - -
Csa01g02038 250 CDD AP2 57 115 IPR001471 GO:0003700|GO:0006355
Csa01g02038 250 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
Csa01g02038 250 SUPERFAMILY DNA-binding domain 56 114 IPR016177 GO:0003677
Csa01g02038 250 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Csa01g02038 250 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Csa01g02038 250 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 14 249 - -
Csa01g02038 250 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
Csa01g02038 250 MobiDBLite consensus disorder prediction 1 58 - -
Csa01g02038 250 Gene3D AP2/ERF domain 56 114 IPR036955 GO:0003700|GO:0006355
Csa01g02038 250 Pfam AP2 domain 55 105 IPR001471 GO:0003700|GO:0006355
Csa01g02038 250 MobiDBLite consensus disorder prediction 143 170 - -
Csa01g02038 250 MobiDBLite consensus disorder prediction 120 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02038 Csa-Chr1:17372663 Csa03g04550 Csa-Chr3:39659241 4.30E-54 dispersed
Csa03g00749 Csa-Chr3:6659341 Csa01g02038 Csa-Chr1:17372663 1.04E-37 dispersed
Csa05g03182 Csa-Chr5:31539266 Csa01g02038 Csa-Chr1:17372663 3.82E-32 dispersed
Csa01g02038 Csa-Chr1:17372663 Csa02g00103 Csa-Chr2:717915 6.75E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30749 PF00847 AP2 2.90E-13 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02038 K09286 - csv:101219745 405.601