Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g02053 | ATGGACCAAAATAATAATCATACTCACTCCAATGGAAAAAATTCTGATTCTCATCCCAATATACCTCAAATCAAATTCACTAAACTCTTCATCAATGGAGAATTCGTTGATTCCGTTTCAGGAAAAACTTTTGATACCATAGATCCGAGAACTGAGCAAGTTATTGCCACGGTTGCCGCCGGTGACAAAGAAGATGTTGATCTCGCCGTGAAAGCCGCCCGTCAAGCCTTTGACCATGGCCCTTGGCCCCGTATGTCCGGCGCCGAGAGAGGGAGGATTATGACGAAACTAGCGGGATTGATAGATGAACACAAGGAGGAAGTGGCAGCGTTGGATACGATTGACGCTGGAAAATTGTTTGTGTTAGGAAAGATCATGGATATACCGGGAGCTGCAAATACACTACGGTACTACGCAGGTGCAGCGGATAAATTCCACGGTGAGGTATTGAAAATGTCAAAACCGCTTCACGGTTACACGTTATTGGAACCCATCGGAGTGGTGGGCCACATCATACCCTGGAATTTTCCCACCACCATGTTCTGGCTCAAAGTCAGCCCCGCTTTAGCCGCCGGTTGCACCATGATCGTCAAGCCCGCCGAACAAACGCCCCTCTCCGCACTCTTTTACGCCCATCTCGCTAAACTGGCTGGTATACCAGATGGAGTACTCAACGTTGTGACTGGATATGGTTCCACAGCAGGTTCAAGCATTGCCAACCACATGGACGTTGACAAGTTGAGCTTCACAGGATCAACCAAAGTGGGAAGACTAGTAATGCAAGCAGCAAGTGCCAGTAATCTGAAGCAAGTGTCCTTAGAATTAGGAGGCAAATCGCCACTTCTAATCTTTAATGATGCGGATCTCGAAAAAGCCGCTGATCTAGCTCTTCTCGCCATCTTTTACAACAAGGGAGAAATTTGCGTGGCTGGCTCTCGAGTTTTAGTTCAAGAAGGAATCTACGACGAATTTGTGAAAAAGATAACTGAAAAGGCAAAATCTTGGGCTGTGGGGGACCCTTTTGACCCTAATGTTAAATATGGACCCCAGGTGGATAAAAAGCAAATGGATAAGATTTTGAAATACATAGAACATGGTAAAAGAGAGGGAGCAACGTTGGTAACTGGGGGCAAGCGTATAGGAAATGTGGGCTATTACATTGAACCCACAATCTTTACAAATGTCAAGGAAGATTCACTAATTGCTCAAGACGAAATATTCGGACCCGTCCTCTCTGTCATTAAATTCAAGACAATTGAGGATGGAATCAGGAGTGCAAACAATACCAAGTATGGGTTAGCAGCTGGGATAGTGACTAATAGCTTAGACATAGCGAACACGGTGTCGAGGTCCATCCGAGCTGGTACGATTTGGATAAATTGTTACTTTGCTTTCGATCCAAGCTGCCCATTTGGAGGGTATAAGGAGAGTGGGTTTGGAAGAGACTCCGGAATGCATGCGATTAACAAGTATCTTCAAACTAAGTCTGTTGTGATTCCTTTGGTTAACACTCCTTGGCTTTGA | 1524 | 45.28 | MDQNNNHTHSNGKNSDSHPNIPQIKFTKLFINGEFVDSVSGKTFDTIDPRTEQVIATVAAGDKEDVDLAVKAARQAFDHGPWPRMSGAERGRIMTKLAGLIDEHKEEVAALDTIDAGKLFVLGKIMDIPGAANTLRYYAGAADKFHGEVLKMSKPLHGYTLLEPIGVVGHIIPWNFPTTMFWLKVSPALAAGCTMIVKPAEQTPLSALFYAHLAKLAGIPDGVLNVVTGYGSTAGSSIANHMDVDKLSFTGSTKVGRLVMQAASASNLKQVSLELGGKSPLLIFNDADLEKAADLALLAIFYNKGEICVAGSRVLVQEGIYDEFVKKITEKAKSWAVGDPFDPNVKYGPQVDKKQMDKILKYIEHGKREGATLVTGGKRIGNVGYYIEPTIFTNVKEDSLIAQDEIFGPVLSVIKFKTIEDGIRSANNTKYGLAAGIVTNSLDIANTVSRSIRAGTIWINCYFAFDPSCPFGGYKESGFGRDSGMHAINKYLQTKSVVIPLVNTPWL* | 508 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 17531029 | 17534718 | + | CsaV3_1G030610.1 | Csa01g02053 | 516550 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g02053 | 507 | PANTHER | DEHYDROGENASE, PUTATIVE-RELATED | 12 | 507 | - | - | |
Csa01g02053 | 507 | ProSitePatterns | Aldehyde dehydrogenases cysteine active site. | 301 | 312 | IPR016160 | GO:0016491 | |
Csa01g02053 | 507 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 277 | 466 | IPR016163 | GO:0016620 | |
Csa01g02053 | 507 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Csa01g02053 | 507 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 31 | 495 | IPR016162 | GO:0016491 | |
Csa01g02053 | 507 | Pfam | Aldehyde dehydrogenase family | 35 | 497 | IPR015590 | GO:0016491 | |
Csa01g02053 | 507 | ProSitePatterns | Aldehyde dehydrogenases glutamic acid active site. | 273 | 280 | IPR029510 | GO:0016491 | |
Csa01g02053 | 507 | PANTHER | ALDEHYDE DEHYDROGENASE-RELATED | 12 | 507 | - | - | |
Csa01g02053 | 507 | SUPERFAMILY | ALDH-like | 23 | 503 | IPR016161 | GO:0016491 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g00183 | Csa-Chr1:1188758 | Csa01g02053 | Csa-Chr1:17531029 | 1.01E-127 | dispersed | |
Csa01g02053 | Csa-Chr1:17531029 | Csa02g00312 | Csa-Chr2:2115327 | 0 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g02053 | K12355 | - | csv:101219029 | 1011.91 |