Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02053 ATGGACCAAAATAATAATCATACTCACTCCAATGGAAAAAATTCTGATTCTCATCCCAATATACCTCAAATCAAATTCACTAAACTCTTCATCAATGGAGAATTCGTTGATTCCGTTTCAGGAAAAACTTTTGATACCATAGATCCGAGAACTGAGCAAGTTATTGCCACGGTTGCCGCCGGTGACAAAGAAGATGTTGATCTCGCCGTGAAAGCCGCCCGTCAAGCCTTTGACCATGGCCCTTGGCCCCGTATGTCCGGCGCCGAGAGAGGGAGGATTATGACGAAACTAGCGGGATTGATAGATGAACACAAGGAGGAAGTGGCAGCGTTGGATACGATTGACGCTGGAAAATTGTTTGTGTTAGGAAAGATCATGGATATACCGGGAGCTGCAAATACACTACGGTACTACGCAGGTGCAGCGGATAAATTCCACGGTGAGGTATTGAAAATGTCAAAACCGCTTCACGGTTACACGTTATTGGAACCCATCGGAGTGGTGGGCCACATCATACCCTGGAATTTTCCCACCACCATGTTCTGGCTCAAAGTCAGCCCCGCTTTAGCCGCCGGTTGCACCATGATCGTCAAGCCCGCCGAACAAACGCCCCTCTCCGCACTCTTTTACGCCCATCTCGCTAAACTGGCTGGTATACCAGATGGAGTACTCAACGTTGTGACTGGATATGGTTCCACAGCAGGTTCAAGCATTGCCAACCACATGGACGTTGACAAGTTGAGCTTCACAGGATCAACCAAAGTGGGAAGACTAGTAATGCAAGCAGCAAGTGCCAGTAATCTGAAGCAAGTGTCCTTAGAATTAGGAGGCAAATCGCCACTTCTAATCTTTAATGATGCGGATCTCGAAAAAGCCGCTGATCTAGCTCTTCTCGCCATCTTTTACAACAAGGGAGAAATTTGCGTGGCTGGCTCTCGAGTTTTAGTTCAAGAAGGAATCTACGACGAATTTGTGAAAAAGATAACTGAAAAGGCAAAATCTTGGGCTGTGGGGGACCCTTTTGACCCTAATGTTAAATATGGACCCCAGGTGGATAAAAAGCAAATGGATAAGATTTTGAAATACATAGAACATGGTAAAAGAGAGGGAGCAACGTTGGTAACTGGGGGCAAGCGTATAGGAAATGTGGGCTATTACATTGAACCCACAATCTTTACAAATGTCAAGGAAGATTCACTAATTGCTCAAGACGAAATATTCGGACCCGTCCTCTCTGTCATTAAATTCAAGACAATTGAGGATGGAATCAGGAGTGCAAACAATACCAAGTATGGGTTAGCAGCTGGGATAGTGACTAATAGCTTAGACATAGCGAACACGGTGTCGAGGTCCATCCGAGCTGGTACGATTTGGATAAATTGTTACTTTGCTTTCGATCCAAGCTGCCCATTTGGAGGGTATAAGGAGAGTGGGTTTGGAAGAGACTCCGGAATGCATGCGATTAACAAGTATCTTCAAACTAAGTCTGTTGTGATTCCTTTGGTTAACACTCCTTGGCTTTGA 1524 45.28 MDQNNNHTHSNGKNSDSHPNIPQIKFTKLFINGEFVDSVSGKTFDTIDPRTEQVIATVAAGDKEDVDLAVKAARQAFDHGPWPRMSGAERGRIMTKLAGLIDEHKEEVAALDTIDAGKLFVLGKIMDIPGAANTLRYYAGAADKFHGEVLKMSKPLHGYTLLEPIGVVGHIIPWNFPTTMFWLKVSPALAAGCTMIVKPAEQTPLSALFYAHLAKLAGIPDGVLNVVTGYGSTAGSSIANHMDVDKLSFTGSTKVGRLVMQAASASNLKQVSLELGGKSPLLIFNDADLEKAADLALLAIFYNKGEICVAGSRVLVQEGIYDEFVKKITEKAKSWAVGDPFDPNVKYGPQVDKKQMDKILKYIEHGKREGATLVTGGKRIGNVGYYIEPTIFTNVKEDSLIAQDEIFGPVLSVIKFKTIEDGIRSANNTKYGLAAGIVTNSLDIANTVSRSIRAGTIWINCYFAFDPSCPFGGYKESGFGRDSGMHAINKYLQTKSVVIPLVNTPWL* 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17531029 17534718 + CsaV3_1G030610.1 Csa01g02053 516550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02053 507 PANTHER DEHYDROGENASE, PUTATIVE-RELATED 12 507 - -
Csa01g02053 507 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 301 312 IPR016160 GO:0016491
Csa01g02053 507 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 277 466 IPR016163 GO:0016620
Csa01g02053 507 MobiDBLite consensus disorder prediction 1 20 - -
Csa01g02053 507 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 31 495 IPR016162 GO:0016491
Csa01g02053 507 Pfam Aldehyde dehydrogenase family 35 497 IPR015590 GO:0016491
Csa01g02053 507 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 273 280 IPR029510 GO:0016491
Csa01g02053 507 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 12 507 - -
Csa01g02053 507 SUPERFAMILY ALDH-like 23 503 IPR016161 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00183 Csa-Chr1:1188758 Csa01g02053 Csa-Chr1:17531029 1.01E-127 dispersed
Csa01g02053 Csa-Chr1:17531029 Csa02g00312 Csa-Chr2:2115327 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02053 K12355 - csv:101219029 1011.91