Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02059 ATGGCAGATTCTAGCTTTGTTCCGCCCCTTGTATACGCGGTGTTTGGAAGCTCTAAACATCTGGCGGTGGGAACGGTGGCGGCTTGTTCGTTGCTCATATCCGAAACTATTGGTGCAGTTGCTTCGCCGGAAGAAGAACCCACATTGTATCTTCATTTGGTTTTCACCGCCACCTTTGTCACCGGCGTCATGCAGGCCGTCTTAGGATTTCTAAGACTCGGAATTTTAGTGGATTTCTTATCGCACTCCACAATCCTTGGATTCATGGGAGGAACGGCTGTGATCATCTGTCTTCAACAACTGAAGGGGATATTTGGACTAACTCATTTCACCTCTAAAACTGACGTTTACTCTGTACTTCATGCCGTTTTCTCTCTTAGAAAAGAGTGGAAATGGGAAAGTGCTCTTGTGGGTGTCGTTTTCCTTCTATTCCTCCAGTTTACAAGGTACTTGAGAAACAGAAAACCAAAGCTCTTTTGGGTGTCAGCTATGGCTCCTATGGTGACAGTGATAGTAGGATGTTTGTTTGCCTATTTCATCAAGGGAAGTCAGCATGGAATCCTAACTGTGGGTCACTTGAGCAAAGGGATAAACCCTATTTCTATTCACTTCTTGAACTTTGATTCCAAATATCTATCAGCTGTAGTACAAACTGGCTTAATCACTGGCCTTATTGCTTTGGCTGAAGGAATAGCAATTGGTCGAAGCTTTGCGATAATAAAAAATGAACAAATCGATGGGAACAAGGAGATGATAGCCTTTGGTTTGATGAACATAGTGGGATCTTTCACTTCCTGCTACTTAACCACTGGGCCATTCTCAAAAACTGCAGTGAACTTCAATGCTGGGTGTAGAACAGCAATGTCAAACATTGTTATGGCAATTTTCATGGCTCTCACTCTCCTCTTTCTAGCTCCTGTCTTCAGCTACACACCTCTTGTCGCCCTTTCCGCCATTATAATGTCCGCCATGCTTGGTCTCATCAAATATGAAGAAATGTATCATCTTCTCAAAGTTGATAAATTTGATTTTTGCATTTGTATGGCGGCTTTCTTGGGTGTTGCTTTCTTAAGCATGGATATTGGAATCATGCTTTCGGTGGGACTTGCTTTGCTGAGAGCTCTTCTTTACATGGCTAGACCAGCTACTTGCAAGCTCGGCAAAATACCAAACTCCAATTTGTACAGAGATGTGGAGCAATATCCTAATGCAACTAGAAACCATGGGATTATTGTTCTTCAACTTGGTTCCCCTATTTATTATGCCAACTCCAACTACATCACAGAAAGGATTTTCAGATGGGTTCGTGATGAGCAGGGCAATTTCGAGGATGGACCTGTGGAACATGTACTCTTGGAGTTGAGCGGGGTCACCTCAATCGACATGACAGGGCTTGAAACGCTAATCGAAATTCGTAGATCATTACAAGCAAACGGAATCCAGATGGGAATTGTAAACCCAAGAATTGTAGTGATGGAGAAGATGATAGCTTCAAAATTCACAGACACAATCGGGAAAGAGAACATCTATTTATCAGTAGATGAAGGAGTAGAAAGGTGTAGAGATTTGGTTCCAAAATTAAAACAAACAGAAACAGGTGCTGGAAGTTCAAACATGAGGACAATGGAGCAGCAAGTATAA 1641 42.47 MADSSFVPPLVYAVFGSSKHLAVGTVAACSLLISETIGAVASPEEEPTLYLHLVFTATFVTGVMQAVLGFLRLGILVDFLSHSTILGFMGGTAVIICLQQLKGIFGLTHFTSKTDVYSVLHAVFSLRKEWKWESALVGVVFLLFLQFTRYLRNRKPKLFWVSAMAPMVTVIVGCLFAYFIKGSQHGILTVGHLSKGINPISIHFLNFDSKYLSAVVQTGLITGLIALAEGIAIGRSFAIIKNEQIDGNKEMIAFGLMNIVGSFTSCYLTTGPFSKTAVNFNAGCRTAMSNIVMAIFMALTLLFLAPVFSYTPLVALSAIIMSAMLGLIKYEEMYHLLKVDKFDFCICMAAFLGVAFLSMDIGIMLSVGLALLRALLYMARPATCKLGKIPNSNLYRDVEQYPNATRNHGIIVLQLGSPIYYANSNYITERIFRWVRDEQGNFEDGPVEHVLLELSGVTSIDMTGLETLIEIRRSLQANGIQMGIVNPRIVVMEKMIASKFTDTIGKENIYLSVDEGVERCRDLVPKLKQTETGAGSSNMRTMEQQV* 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17605587 17608462 + CsaV3_1G030670.1 Csa01g02059 516556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02059 546 PANTHER SULFATE TRANSPORTER 3.5-RELATED 4 528 IPR030316 GO:1902358
Csa01g02059 546 PANTHER SULFATE TRANSPORTER 4 528 IPR001902 GO:0015301|GO:0016020|GO:0055085
Csa01g02059 546 SUPERFAMILY SpoIIaa-like 402 521 IPR036513 -
Csa01g02059 546 Gene3D STAS domain 380 523 IPR036513 -
Csa01g02059 546 Pfam STAS domain 401 515 IPR002645 -
Csa01g02059 546 CDD STAS_SulP_like_sulfate_transporter 401 513 - -
Csa01g02059 546 Pfam Sulfate permease family 4 350 IPR011547 GO:0016021
Csa01g02059 546 TIGRFAM sulP: sulfate permease 4 515 IPR001902 GO:0015301|GO:0016020|GO:0055085
Csa01g02059 546 ProSiteProfiles STAS domain profile. 400 520 IPR002645 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02059 Csa-Chr1:17605587 Csa07g01694 Csa-Chr7:17436452 0 dispersed
Csa01g02059 Csa-Chr1:17605587 Csa01g02063 Csa-Chr1:17661706 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02059 K17471 - csv:116402148 1043.49