Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02063 ATGGCAGATTCTAGCTTTGTTCCGCCCCTTGTATACGCGGTGTTTGGAAGCTCTAAACATCTGGCGGTGGGAACGGTGGCGGCTTGTTCGTTGCTCATATCCGAAACTATTGGTGCAGTTGCTTCGCCGGAAGAAGAACCCACATTGTATCTTCATTTGGTTTTCACCGCCACCTTTGTCACCGGCGTCATGCAGGCCGTCTTGGGATTTCTAAGACTCGGAATTTTAGTGGATTTCTTATCGCACTCCACAATCCTTGGATTTATGGGAGGAACGGCTGTGATCATCTGTCTTCAACAACTGAAGGGGATATTTGGACTAACTCATTTCACCTCTAAAACTGACGTTTACTCTGTACTTCATGCCGTTTTCTCTCTTAGAAAAGAGTGGAAATGGGAAAGTGCTCTTGTGGGTGTCGTTTTCCTTCTATTCCTCCAGTTTACAAGGTACTTGAGAAACAGAAAACCAAAGCTCTTTTGGGTGTCAGCTATGGCTCCTATGGTGACAGTGATAGTAGGATGTTTGTTTGCCTATTTCATCAAGGGAAGTCAGCATGGAATCCTAACTGTGGGTCACTTGAGCAAAGGGATAAACCCTATTTCTATTCACTTCTTGAACTTTGATTCCAAATATCTATCAGCTGTAGTACAAACTGGCTTAATCACTGGCCTTATTGCTTTGGCTGAAGGAATAGCTATTGGTCGAAGCTTTGCGATAATAAAAAATGAACAAATCGATGGGAACAAGGAGATGATAGCCTTTGGTTTGATGAACATAGTGGGATCTTTCACTTCCTGCTACTTAACCACTGGGCCATTCTCAAAAACTGCAGTGAACTTCAATGCTGGGTGTAGAACAGCAATGTCAAACATTGTTATGGCAATTTTCATGGCTCTCACTCTCCTCTTTCTAGCTCCTGTCTTCAGCTACACACCTCTTGTCGCCCTTTCCGCCATTATAATGTCCGCCATGCTTGGTCTCATCAAATATGAAGAAATGTATCATCTTCTCAAAGTTGATAAATTTGATTTTTGCATTTGTATGGCGGCTTTCTTGGGTGTTGCTTTCTTAAGCATGGATATTGGCATCATGCTTTCGGTGGGACTTGCTTTGCTGAGAGCTCTTCTTTACATGGCTAGACCAGCTACTTGCAAGCTCGGCAAAATACCAAACTCCAATTTGTACAGAGATGTGGAGCAATATCCTAATGCAACTAGAAACCATGGGATTATTGTTCTTCAACTTGGTTCCCCTATTTATTATGCCAACTCCAACTACATCACAGAAAGGATTTTCAGATGGGTTCGTGATGAGCAGGGCAATTTCGAGGATGGACCTGTCGAACATGTACTCTTGGAGTTGAGCGGTAATAAAGCTACAAAAACCCCTTCCTTTCAGATCCAAACATTTGACAAATTATGGAGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTATAGGAGTCACCTCAATCGACATGACAGGGCTTGAAACGCTAACCGAAATTCGTAGATCATTACAAGCAAACGGAATCCAGATGGGAATTGTAAACCCAAGAATTGTAGTGATGGAGAAGATGATAGCTTCAAAATTCACAGACACAATCGGGAAAGAGAACATCTATTTATCAGTAGATGAAGGAGTAGAAAGGTGTAGAGATTTGGTTCCAAAATTAAAACAAACAGAAACAGGTGCTGGAAGTTCAAACATGAGGACAATGGAGCAGCAAGTATAA 1740 41.84 MADSSFVPPLVYAVFGSSKHLAVGTVAACSLLISETIGAVASPEEEPTLYLHLVFTATFVTGVMQAVLGFLRLGILVDFLSHSTILGFMGGTAVIICLQQLKGIFGLTHFTSKTDVYSVLHAVFSLRKEWKWESALVGVVFLLFLQFTRYLRNRKPKLFWVSAMAPMVTVIVGCLFAYFIKGSQHGILTVGHLSKGINPISIHFLNFDSKYLSAVVQTGLITGLIALAEGIAIGRSFAIIKNEQIDGNKEMIAFGLMNIVGSFTSCYLTTGPFSKTAVNFNAGCRTAMSNIVMAIFMALTLLFLAPVFSYTPLVALSAIIMSAMLGLIKYEEMYHLLKVDKFDFCICMAAFLGVAFLSMDIGIMLSVGLALLRALLYMARPATCKLGKIPNSNLYRDVEQYPNATRNHGIIVLQLGSPIYYANSNYITERIFRWVRDEQGNFEDGPVEHVLLELSGNKATKTPSFQIQTFDKLWSLFVCLFVCLFVCIGVTSIDMTGLETLTEIRRSLQANGIQMGIVNPRIVVMEKMIASKFTDTIGKENIYLSVDEGVERCRDLVPKLKQTETGAGSSNMRTMEQQV* 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17661706 17664594 + CsaV3_1G030710.1 Csa01g02063 516560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02063 579 Pfam STAS domain 401 548 IPR002645 -
Csa01g02063 579 Gene3D STAS domain 395 556 IPR036513 -
Csa01g02063 579 Pfam Sulfate permease family 4 350 IPR011547 GO:0016021
Csa01g02063 579 ProSiteProfiles STAS domain profile. 400 553 IPR002645 -
Csa01g02063 579 SUPERFAMILY SpoIIaa-like 487 554 IPR036513 -
Csa01g02063 579 PANTHER SULFATE TRANSPORTER 487 561 IPR001902 GO:0015301|GO:0016020|GO:0055085
Csa01g02063 579 PANTHER SULFATE TRANSPORTER 4 460 IPR001902 GO:0015301|GO:0016020|GO:0055085
Csa01g02063 579 PANTHER SULFATE TRANSPORTER 3.5-RELATED 487 561 IPR030316 GO:1902358
Csa01g02063 579 TIGRFAM sulP: sulfate permease 4 548 IPR001902 GO:0015301|GO:0016020|GO:0055085
Csa01g02063 579 CDD STAS_SulP_like_sulfate_transporter 401 546 - -
Csa01g02063 579 PANTHER SULFATE TRANSPORTER 3.5-RELATED 4 460 IPR030316 GO:1902358
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02063 Csa-Chr1:17661706 Csa07g01694 Csa-Chr7:17436452 0 dispersed
Csa01g02059 Csa-Chr1:17605587 Csa01g02063 Csa-Chr1:17661706 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02063 K17471 - csv:105435742 1103.2