Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02065 ATGAATCCCAAATCCCATTTCAACTCACTTTTCCTCTTCTCCCTCCTTCTCCACCTCTTCGCCGCCCATGGAAGCCTCTCTGACGCTGAAGCTCTTTTCATCCGCCACCGCCAGCTTCTTTACTACAGAGACGAGTTCGGCGACCGCGGCGAACTAGTCACTGTCGACCCTTCTCTTGTCTTTGAAAATGACAGAATTAGAAATGCTTACATTGCACTTCAAGCTTGGAAACTGGCCATTTTATCCGACCCTCTGAATCAAACCGCCAACTGGGTCGGATCTAATGTCTGTAACTACTTCGGCGTTTTCTGTGCTCCATCCTTGGACAACCCCAAAATCCGTACCGTCGCCGGTATCGATCTCAACCACGGCGACATTGCTGGATACCTCCCTGAAGAGCTCGGTTTGCTTACTGATCTTGCATTGTTCCATATCAACTCTAACAGATTCTGCGGTACTCTTCCCCACAGATTTGACCGTCTCAAGTTGCTTTATGAATTAGATCTCAGTAATAACCGGTTTGCCGGTAAGTTTCCGGACGTTGTTCTCAAGCTTCCGACACTCAAGTTCTTGGATCTGAGGTTTAATGAATTTGAAGGGAATGTACCCAGAGAGCTGTTTGATAAGGATTTGGACGCCATTTTTATTAACCATAACAGGTTTAGATTTGAGTTGCCGGATAATTTTGGGAACTCGCCGGTGTCGGTGATTGTTCTTGCGAACAATAAGTTTCATGGGTGTCTGCCTTCGAGCTTGGGGAATATGACGAGGTTGAATGAGATTATTATGATGAATAATGGGCTTAATTCTTGCTTACCACCGGAAATTGGGGCGTTGAAGAATTTGACGGTGTTTGATGTTAGTTCGAATGAGTTGGTGGGGCCGTTGCCGGAGACTTTTGGAGGGCTTGTGAGTTTGGAGCAACTTAACGTGGCGAATAATTTTCTTTCAGGGAAGATTCCGGAGAATATTTGCGAGTTGCCTAAGCTTCAAAACTTTACGTTCTCGAATAACTTCTTCTCCGGTGAGCCACCCGCGTGTTTGAGGGTTCCGGATTTCAGTGATCGGAGGAATTGTTTGGCTGGACGGTCGGGACAGCGGTCGACTGGGCAATGTAATGCGTTCTTGTCGAGACCTGTTGATTGCAATGCGTTTAAATGTGGTGGTTCATCTTCTGGTTCGCCTTCTACTCCATTTACTCCGCCGGTAGTTTCGCCGTCTTCGCCTCCGTCACCAGCAGGTACGGTGTCTCCTCCATCGTCGTCTCATTCTCCCAATGCACCATCGGCCCCGCCACTCTCGCCCCACTTTCCTCCTCTGTCGCCACATTCACCACCGTCGCCGCCTTCTTCTCCATCTACGCCGTCGCAGCCGTCAGAACCGCCTTCTTCTCCATCGACCCCTTCAACTCCTTCCTCGCCGCCGCAATTTCCCTCTCCAACTGCACCGTCGCCTTCATCTCCACCTAAAGGTCATGCTCCGCCGTCATTGCCATCACCTTCATCACCCCCACAAGATCATACTCCGCCATCTGAGCCTTCGCCATCATCACCACCCCAAGATCACACTCCGCCAGGTCCACCTTCGTCCGAGCCCACCCCACCATTGCCGCCACAAGGTCACCGTCCACCAGCATCTCCTTCGCCGTTCAAGCCCTCCCCTTCATCCCCGCCACAAGGTCACACTCCTACGGTTCCTCCTTCGCCTTCCGAACCATCACCGCCTCAAGGGAACAATCCGCCAGCGGAGCCTTCTCCTCCAGGAACATCATCACCACCATTCCCAGTTTACAGTCCGCCTCCGCCACCGCCACATTTCCCAGATTTTCCCTCGCCACCATCTACACAACCTCCAGTCTACTGCCCACGATCCCCATATCCACCATCTCCTCCATCCTTCTCCCCATATCCACCATCTCCTCCATCCTTCTCCCCAAACCCACCTCTCACTCACCCCAACTCCCCTCCACCGCCATCACCGCCGGTACCTGTTCATTCTCCCCCTCCCCCTCTTCATACAACCCCATCGCCGCTTCCTCTTCCTTGCATTCAACCTCCTCCACCAAATGTTCAATATCCAGAACCGCCACCCTCTCCTTCACCAACCCCGTCATCTCCAATTCACTACAATACCCCACCACCGCCGGTCCATTACCAAGCTCCTCCCTCACCTTCACCGCCCGTCCACATATATCCGCCGCCATCTCCAACGCCCCCTCCTCCAATAGTTTACGAAAACCCACCACCGCCCGTTGTCTACCAAAGCCCACCGCCGCCTCCAACTCCAGTATACGGAGGCCCACTGCCACCAATCTACGGAGTTCCGTACGCCTCTCCTCCTCCACCACCCTTCTATTAG 2358 52.67 MNPKSHFNSLFLFSLLLHLFAAHGSLSDAEALFIRHRQLLYYRDEFGDRGELVTVDPSLVFENDRIRNAYIALQAWKLAILSDPLNQTANWVGSNVCNYFGVFCAPSLDNPKIRTVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTLPHRFDRLKLLYELDLSNNRFAGKFPDVVLKLPTLKFLDLRFNEFEGNVPRELFDKDLDAIFINHNRFRFELPDNFGNSPVSVIVLANNKFHGCLPSSLGNMTRLNEIIMMNNGLNSCLPPEIGALKNLTVFDVSSNELVGPLPETFGGLVSLEQLNVANNFLSGKIPENICELPKLQNFTFSNNFFSGEPPACLRVPDFSDRRNCLAGRSGQRSTGQCNAFLSRPVDCNAFKCGGSSSGSPSTPFTPPVVSPSSPPSPAGTVSPPSSSHSPNAPSAPPLSPHFPPLSPHSPPSPPSSPSTPSQPSEPPSSPSTPSTPSSPPQFPSPTAPSPSSPPKGHAPPSLPSPSSPPQDHTPPSEPSPSSPPQDHTPPGPPSSEPTPPLPPQGHRPPASPSPFKPSPSSPPQGHTPTVPPSPSEPSPPQGNNPPAEPSPPGTSSPPFPVYSPPPPPPHFPDFPSPPSTQPPVYCPRSPYPPSPPSFSPYPPSPPSFSPNPPLTHPNSPPPPSPPVPVHSPPPPLHTTPSPLPLPCIQPPPPNVQYPEPPPSPSPTPSSPIHYNTPPPPVHYQAPPSPSPPVHIYPPPSPTPPPPIVYENPPPPVVYQSPPPPPTPVYGGPLPPIYGVPYASPPPPPFY* 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17694260 17697585 + CsaV3_1G030730.1 Csa01g02065 516562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02065 785 MobiDBLite consensus disorder prediction 389 764 - -
Csa01g02065 785 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 11 468 - -
Csa01g02065 785 Gene3D Ribonuclease Inhibitor 69 231 IPR032675 -
Csa01g02065 785 SUPERFAMILY L domain-like 78 348 - -
Csa01g02065 785 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 11 468 - -
Csa01g02065 785 Gene3D Ribonuclease Inhibitor 232 363 IPR032675 -
Csa01g02065 785 MobiDBLite consensus disorder prediction 424 764 - -
Csa01g02065 785 MobiDBLite consensus disorder prediction 399 416 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02065 Csa02g00136 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02065 Csa-Chr1:17694260 Csa03g01297 Csa-Chr3:9923062 5.13E-149 dispersed
Csa01g02065 Csa-Chr1:17694260 Csa02g00136 Csa-Chr2:948141 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02065 - - csv:101220934 904.82