Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02093 ATGGCTGCAGTGTTTTACTTTACAACCCAGCTCCCATTTTCCCTAATTTCATTTCTCCTGCTTCTTCTTCTTCTTCTTCGTTCTGTTCAATCTGAGCCCACCGCCGACAAGGCTGCTCTTCTTGATTTTTTGAACAAAACCCCTCATGAGAGTCGCCTTCAATGGAATGCTTCTGACACTGCCTGTAATTGGGTTGGAGTTTCCTGTGATGCGACTCGGTCCTTTGTTTTTTCTCTCCGGTTGCCTGGTGTGGGGCTTGTTGGTCCGATTCCGGCGAATACTATCGGCCGGTTGAATCGCCTTCGAGTTCTTAGTCTCCGATCGAATAGAATCTCTGGGGAGTTGCCGGCGGATTTTTCTAATTTGGGATTTCTTCGGAGTCTTTATCTGCAGGACAATGAGCTTTCTGGGAATTTTCCGGCGAGTGTGACTCAGTTGACTCGGCTGACTCGACTTGATCTTTCGTCCAATAATTTCTCTGGTCCGATTCCATTTTCGGAGAATAATTTGACGCATTTGAGTGGGCTTTTCTTAGAGAATAATGGGTTTTCAGGTTCTCTGCCGAGTATTCCTGCGGCTGCGACTAGTTTAACGGGATTCAATGTATCGAATAATAAGCTCAATGGATCCATTCCAGAAACCCTTTCGAAATTTAATGCTTCGTCTTTTGCCGGAAATTTAGCGCTCTGTGGTGGTCCACTGCCGTCATGCAGCCCGTTTTTTCCTTCCCCTGCTCCTTCGCCAACGTCAGCCGTGAAGCCGCCACAATTTCCCGTCGAGAAGAAGTCTAAAAAGCTCTCCATCGCTGCCATTGTCGGAATTGTGGTTGGCGCTGCTTTCGTTGCGTTTATATTACTGTTTTTACTTCTGTTTTGTCTCCGGAAGCGCGAGCGGAGGCAGCCGGCGAAGCCTCCGAGTACGGTGGTTGCTGCTCGATCTGTTCCAGCTGAGGCAGGTACATCGTCGTCGAAAGACGACATCACCGGCGGATCAGTTGAGACGGAGAAAAATAGGTTAGTGTTCTTTGAAGGTGGGGTTTACAGCTTTGATTTGGAGGACTTGTTGAGGGCTTCGGCAGAGGTTTTAGGTAAAGGAAGCGTTGGAACGTCGTACAAGGCGGTGCTGGAAGAAGGAACCACCGTGGTGGTGAAGAGATTGAAAGATGTGGTGATGACGAAGAAGGAATTCGAAACGCAAATGGAAGCTCTGGGAAATGTTAAACATGAAAATGTGGTTCCTCTTAGAGCTTTCTACTTTTCCAGAGATGAGAAATTGCTTGTTTCCGATTACATGGCCGCCGGCAGCCTTTCTTCTTCCCTTCACGGAAGCAGAGGATCCGGCCGCACGCCACTAGATTGGGACAACCGGATGAAAATCGCATTAAGCGCAGCAAGAGGATTGGCTCACCTCCATCTGTCGGGAAAACTCGTCCACGGCAACATCAAATCATCGAACATCCTCCTACGCCCCAACCACGACGCTGCCGTCTCTGACTTCGGTTTGAACCCTCTCTTCGGCGCCTCAACGCCGCCCAACCGTATCGCTGGCTATCGCGCACCGGAGGTTGTTGAAACCCGAAAGGTCACTTTCAAGTCCGACGTGTACAGTTTTGGCGTGTTGCTGTTGGAGCTTCTCACCGGGAAATCACCGAATCAAGCGTCGTTGGGTGAAGAAGGGATTGATCTCCCTCGGTGGGTCCAGTCAGTGGTCCGAGAGGAATGGACGGCAGAGGTTTTTGATGTGGAGTTAATGAGGTACCACAATATCGAAGAAGAGATGGTTCAACTTTTACAAATTGCGATGGCTTGCGTCGCCACGGTGCCGGACCAGCGGCCGTCGATGCAGGAGGTGGTTCGAATGATTGAGGAATTGAACCGGGTGGAAACCGACGACGGGCTACGGCAGTCGTCCGATGACCCATCAAAAGGATCAGACGGTCAGACGCCGCCCCAAGAGTCGAGCACCACCCCACCCGGAGTTGGCGGACCACCGTAG 1995 50.73 MAAVFYFTTQLPFSLISFLLLLLLLLRSVQSEPTADKAALLDFLNKTPHESRLQWNASDTACNWVGVSCDATRSFVFSLRLPGVGLVGPIPANTIGRLNRLRVLSLRSNRISGELPADFSNLGFLRSLYLQDNELSGNFPASVTQLTRLTRLDLSSNNFSGPIPFSENNLTHLSGLFLENNGFSGSLPSIPAAATSLTGFNVSNNKLNGSIPETLSKFNASSFAGNLALCGGPLPSCSPFFPSPAPSPTSAVKPPQFPVEKKSKKLSIAAIVGIVVGAAFVAFILLFLLLFCLRKRERRQPAKPPSTVVAARSVPAEAGTSSSKDDITGGSVETEKNRLVFFEGGVYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVMTKKEFETQMEALGNVKHENVVPLRAFYFSRDEKLLVSDYMAAGSLSSSLHGSRGSGRTPLDWDNRMKIALSAARGLAHLHLSGKLVHGNIKSSNILLRPNHDAAVSDFGLNPLFGASTPPNRIAGYRAPEVVETRKVTFKSDVYSFGVLLLELLTGKSPNQASLGEEGIDLPRWVQSVVREEWTAEVFDVELMRYHNIEEEMVQLLQIAMACVATVPDQRPSMQEVVRMIEELNRVETDDGLRQSSDDPSKGSDGQTPPQESSTTPPGVGGPP* 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18117705 18121287 + CsaV3_1G031010.1 Csa01g02093 516590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02093 664 SUPERFAMILY Protein kinase-like (PK-like) 360 622 IPR011009 -
Csa01g02093 664 MobiDBLite consensus disorder prediction 624 664 - -
Csa01g02093 664 Gene3D Phosphorylase Kinase; domain 1 324 430 - -
Csa01g02093 664 Gene3D Ribonuclease Inhibitor 192 240 IPR032675 -
Csa01g02093 664 ProSiteProfiles Protein kinase domain profile. 356 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02093 664 MobiDBLite consensus disorder prediction 302 329 - -
Csa01g02093 664 PANTHER OS05G0480400 PROTEIN 15 642 - -
Csa01g02093 664 MobiDBLite consensus disorder prediction 639 655 - -
Csa01g02093 664 MobiDBLite consensus disorder prediction 624 638 - -
Csa01g02093 664 Pfam Leucine rich repeat N-terminal domain 35 70 IPR013210 -
Csa01g02093 664 Gene3D Ribonuclease Inhibitor 34 191 IPR032675 -
Csa01g02093 664 SUPERFAMILY L domain-like 42 219 - -
Csa01g02093 664 PANTHER OS05G0588300 PROTEIN 15 642 - -
Csa01g02093 664 Gene3D Transferase(Phosphotransferase) domain 1 431 642 - -
Csa01g02093 664 Pfam Leucine rich repeat 100 159 IPR001611 GO:0005515
Csa01g02093 664 Pfam Protein kinase domain 359 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02093 Csa02g00154 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00727 Csa-Chr1:4605115 Csa01g02093 Csa-Chr1:18117705 0 dispersed
Csa01g02093 Csa-Chr1:18117705 Csa06g01121 Csa-Chr6:9313912 0 dispersed
Csa05g01619 Csa-Chr5:19188784 Csa01g02093 Csa-Chr1:18117705 6.42E-151 dispersed
Csa03g03036 Csa-Chr3:28729553 Csa01g02093 Csa-Chr1:18117705 5.87E-23 transposed
Csa03g03364 Csa-Chr3:30424877 Csa01g02093 Csa-Chr1:18117705 1.34E-145 transposed
Csa05g00862 Csa-Chr5:6592954 Csa01g02093 Csa-Chr1:18117705 5.24E-11 transposed
Csa05g02630 Csa-Chr5:27427391 Csa01g02093 Csa-Chr1:18117705 2.04E-74 transposed
Csa05g02631 Csa-Chr5:27428234 Csa01g02093 Csa-Chr1:18117705 2.06E-81 transposed
Csa06g02957 Csa-Chr6:25603384 Csa01g02093 Csa-Chr1:18117705 4.45E-102 transposed
Csa07g01484 Csa-Chr7:15185546 Csa01g02093 Csa-Chr1:18117705 2.39E-80 transposed
Csa04g00935 Csa-Chr4:6987610 Csa01g02093 Csa-Chr1:18117705 1.31E-100 transposed
Csa05g01191 Csa-Chr5:12337268 Csa01g02093 Csa-Chr1:18117705 8.84E-109 transposed
Csa01g02093 Csa-Chr1:18117705 Csa02g00154 Csa-Chr2:1087160 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77817 PF00069 Pkinase 6.40E-37 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02093 - - csv:101209965 1158.67