Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02097 ATGCTCAAAGTTGGACGATCCTTTTACTCTCCTTGTATTAAGAAGCCTCAGCATGTTGGGGGTGGTCTGCAAGCATGGCGAGGCTTCTATCAAAGCATCCGGCCTACTCAAATGGGATTGTCTCTAAATATTGACATGTCATCCACTGCATTCATTGAAGCAATCCCGGTCATTGATTTTGTCGCTCAACTCTTAAACAAAGACGTGTACTCTAGAACATTGTCTGATGCTGATCGTATCAAGGTCAAAAAAGTACTTAGAGGTGTAAAAGTTGAAGTTACACATAGAGGAAACGTACGAAGGAAATATCGGATTTCAGGGCTAACATCACAGCCTACAAGAGAGCTAATTTTCCCTCTTGATGAGCAGATGAACATGAAATCTGTAGTTGAGTACTTCCAAGAGATGTATGGGTATACCATTCAGTATACACATTTGCCTTGCCTTCAAGTAGGAAACCAGAAGAAGGTGAATTATCTACCCATGGAGGCATGTAAGATACTCAAAGGACAGAGATACACAAAAGGACTTAACGAAAAGCAAATAACTTCCTTGTTGAAGGTTTCATGCCAAAGACCCTCTGATCAGGAAATGGACATTTTACAGACTGTTCATGAGAATGCATATGAGGCAGATCCATACGCAAAAGAATTTCGAATCAGCATTGACAACAAGCTTACATCAGTTGAAGCACGAGTCCTTCCATCTCCATGGCTAAAATTTCATGATACTGGAAAAGAAAAGGAACATCAGCCTCAAGTTGGTCAGTGGAATATGATGAATAAGAAAGTTATAGATGGAAGTGTTATAAGATACTGGGCTTGTATAAATTTCTCACGTAACGTTCAAGAGAGCATAGCTCGTGGTTTCTGTCAACAGCTGGTCCAGATGTGCCAGATCTCTGGCATGGAATTTAACCCAGATCCTGCAATTCCTATATACTCAGCAAGACCAGATCAAGTGAAGAAGGCCTTAAAATTTGTATATGGTGCGGTTTATAACAAAAATGAAGGGAAAGAGTTAGATTTGCTGATAGCTATTCTTCCTGACAACAATGGCTCATTATATGGTGATCTTAAAAGGATCTGTGAAACAGAATTGGGATTGATATCCCAGTGTTGTCTAACAAAACATGTCTTCAAGAAGAGCAGACAGTACTTGGCGAACGTGTCTCTTAAGATCAATGTCAAGATGGGTGGAAGAAACACTGTTCTTTTAGATGCTTTACGGGCAAGAATTCCTCTAGTCAGTGACATACCAACCATTATTTTTGGAGCTGACGTCACACATCCAGAATCTGGAGAGGATTCTCTTCCATCAATAGCAGCTGTTGTGGCTTCCCAAGATTGGCCAGAAGTTACAAAATATGCTGGATTGGTATGTGCGCAGCCGCACAGGGAGGAACTAATTCAAGATTTATTCAAAACGTGGAAGGATCCTCATCGGGGAACAGTTGCCGGGGGTATGATAAGGGAGCTCTTGCTTTCATTTAAGAAGGCCACTGGACAAAAACCATTAAGGATAATATTCTATAGGGATGGGGTCAGTGAGGGTCAGTTCTACCAGGTTCTACTGCACGAACTCGATGCCATACGCAAGGCCTGTGCTTCACTAGAACCCAGTTACCAACCTCCAGTAACTTTTATCATAGTCCAAAAGCGACACCACACCAGACTCTTTGCATCCAATCACAACGATAGGAGTAGCACTGACAAGAGTGGTAACATTTTACCAGGTACTGTCGTGGATTCAAAAATATGTCATCCAACTGAGTTCGACTTTTATCTATGCAGTCACGCAGGAATCCAGGGAACAAGTCGTCCTGCACATTATCACGTTCTTTGGGATGAGAACAATTTCAGTGCGGATGAAATTCAATCTCTGACTAATAATCTCTGTTACACGTATGCTCGGTGCACAAGATCGGTCTCAGTAGTGCCTCCAGCATACTACGCTCATTTAGCAGCATACAGAGCTCGATTCTACGTAGAACCCGACGCACAGGAGAATGCCAAAAGATGCTGCACTCGAACCACAAATGGGTCCTGTGTCCGGCCTCTGCCTGCGCTGAAAGAGAGAGTGAAAAATGTAATGTTCTATTGCTGA 2106 42.4 MLKVGRSFYSPCIKKPQHVGGGLQAWRGFYQSIRPTQMGLSLNIDMSSTAFIEAIPVIDFVAQLLNKDVYSRTLSDADRIKVKKVLRGVKVEVTHRGNVRRKYRISGLTSQPTRELIFPLDEQMNMKSVVEYFQEMYGYTIQYTHLPCLQVGNQKKVNYLPMEACKILKGQRYTKGLNEKQITSLLKVSCQRPSDQEMDILQTVHENAYEADPYAKEFRISIDNKLTSVEARVLPSPWLKFHDTGKEKEHQPQVGQWNMMNKKVIDGSVIRYWACINFSRNVQESIARGFCQQLVQMCQISGMEFNPDPAIPIYSARPDQVKKALKFVYGAVYNKNEGKELDLLIAILPDNNGSLYGDLKRICETELGLISQCCLTKHVFKKSRQYLANVSLKINVKMGGRNTVLLDALRARIPLVSDIPTIIFGADVTHPESGEDSLPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKTWKDPHRGTVAGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPSYQPPVTFIIVQKRHHTRLFASNHNDRSSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYVEPDAQENAKRCCTRTTNGSCVRPLPALKERVKNVMFYC* 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18192607 18197408 + CsaV3_1G031050.1 Csa01g02097 516594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02097 701 Pfam Mid domain of argonaute 252 328 IPR032473 -
Csa01g02097 701 SMART PAZ_2_a_3 59 191 IPR003100 GO:0005515
Csa01g02097 701 SMART Piwi_a_2 343 664 IPR003165 GO:0003676
Csa01g02097 701 Pfam PAZ domain 59 185 IPR003100 GO:0005515
Csa01g02097 701 ProSiteProfiles Piwi domain profile. 343 664 IPR003165 GO:0003676
Csa01g02097 701 SUPERFAMILY Ribonuclease H-like 335 665 IPR012337 -
Csa01g02097 701 ProSiteProfiles PAZ domain profile. 55 169 IPR003100 GO:0005515
Csa01g02097 701 Gene3D paz domain 48 173 - -
Csa01g02097 701 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 3 700 - -
Csa01g02097 701 SMART DUF1785_2 2 54 IPR014811 -
Csa01g02097 701 Pfam Argonaute linker 1 domain 4 53 IPR014811 -
Csa01g02097 701 CDD Piwi_ago-like 213 662 IPR045246 -
Csa01g02097 701 Gene3D - 233 406 - -
Csa01g02097 701 PANTHER PROTEIN ARGONAUTE 10 3 700 - -
Csa01g02097 701 CDD PAZ_argonaute_like 54 168 - -
Csa01g02097 701 Gene3D - 412 701 IPR036397 GO:0003676
Csa01g02097 701 SUPERFAMILY PAZ domain 49 208 IPR036085 GO:0005515
Csa01g02097 701 Pfam Piwi domain 344 662 IPR003165 GO:0003676
Csa01g02097 701 Pfam Argonaute linker 2 domain 198 241 IPR032472 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02097 Csa-Chr1:18192607 Csa03g01284 Csa-Chr3:9816222 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02097 K11593 - csv:101213206 1409.05