Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02115 ATGGGAATTGACGGTGACAGTGTTGTGAAGGGTTTCGGCGGCGGATGGGGCGTCGTCGCTAAACCTTGCGACTCCTGCAAGACTGGCCCTGCTGCTGTCTATTGTCGACCGGACTCGGCTTTTCTCTGCCTTCCCTGCGACGCCAAAATTCATTGCGCCAACAAGCTCGCCTCTCGCCACGAGCGTGTCTGGATGTGCGAGGTCTGTGAACAAGCTCCTGCTGTGGTCATGTGCAAGGCTGATGCTGCCGCTCTCTGTGTCACTTGTGATGCCGATATTCACTCTGCTAACCCATTAGCCCGTCGCCACGAGCGTGTCCCTGTCGAGCCTTTTTTCGACTCGACGGAATCAGTTGTTAAATCCTCCTCTGTTTTCAATTTTCTGGTTCCTAATGAAACTACTGCCCCTGTTTGTGATGGTGCCCATCACCACGAGGAAGTGGAGGTTTCCTCCTGGCTTTTATCCAACTCGTTTTTCAACTCTAAGCTCGTCGACGGCCCTGAAATCAAACCTCCCAGCGGTGATCATTTGTTCTTCAACGAAATGGATTCTTTTATTGACTTTGAATATCCAAATCCAGTCAACAACCACAGCGCTATTAACGACAGCGTCGTCCCTGTTCAGACGAAGCCACTCCTTACGCCGGTTATTAACCAGACCCACTCCCCTGAAAATTGCTACGACATTGATTTTTGTAGATCCAAGCTCAATTCATTCGGCTATCAGCCGCAATCCCTAAGTCACAGTGTTTCTTCTTCCTCCTTAGAAGTTGGAGTCGTTCCAGAAGGGAATTCGGTGTCGGACATATCATACCCGATGGGTCAAAACGTGAGTACTGGTGCGGATTCAGGGCTACCGTTGTCAGGATCCGGAAACCAAGCGACACAATTGTGTGGAATGGATCGAGAAGCGAGAGTGTTGAGGTACAGAGAGAAAAGGAAGAACCGGAAATTCGAGAAGACAATCCGATACGCTTCAAGAAAAGCTTATGCTGAAACCCGGCCGAGAATCAAAGGCCGGTTCGCAAAACGAACCGATATGCTATCAGAGGTTGATGAAATGTATGGCTCAGCTGCTTCACATGTGCTCCTTACGGACGCTCAATACGGACTCGTACCAACGTTTTGTCCATAA 1134 49.82 MGIDGDSVVKGFGGGWGVVAKPCDSCKTGPAAVYCRPDSAFLCLPCDAKIHCANKLASRHERVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPFFDSTESVVKSSSVFNFLVPNETTAPVCDGAHHHEEVEVSSWLLSNSFFNSKLVDGPEIKPPSGDHLFFNEMDSFIDFEYPNPVNNHSAINDSVVPVQTKPLLTPVINQTHSPENCYDIDFCRSKLNSFGYQPQSLSHSVSSSSLEVGVVPEGNSVSDISYPMGQNVSTGADSGLPLSGSGNQATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDMLSEVDEMYGSAASHVLLTDAQYGLVPTFCP* 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18437986 18448213 - CsaV3_1G031230.1 Csa01g02115 516612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02115 377 CDD Bbox1_BBX-like 22 65 - -
Csa01g02115 377 Pfam CCT motif 302 344 IPR010402 GO:0005515
Csa01g02115 377 ProSiteProfiles Zinc finger B-box type profile. 23 65 IPR000315 GO:0008270
Csa01g02115 377 Pfam B-box zinc finger 63 108 IPR000315 GO:0008270
Csa01g02115 377 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 9 375 IPR045281 GO:0009909
Csa01g02115 377 SMART bboxneu5 66 108 IPR000315 GO:0008270
Csa01g02115 377 SMART bboxneu5 18 65 IPR000315 GO:0008270
Csa01g02115 377 CDD Bbox1_BBX-like 66 108 - -
Csa01g02115 377 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 9 375 - -
Csa01g02115 377 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270
Csa01g02115 377 ProSiteProfiles CCT domain profile. 302 344 IPR010402 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02115 Csa02g00615 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02115 Csa-Chr1:18437986 Csa06g00354 Csa-Chr6:2826773 1.34E-08 dispersed
Csa05g02613 Csa-Chr5:27321989 Csa01g02115 Csa-Chr1:18437986 2.55E-07 dispersed
Csa06g00975 Csa-Chr6:7889202 Csa01g02115 Csa-Chr1:18437986 2.40E-08 dispersed
Csa06g01167 Csa-Chr6:9796099 Csa01g02115 Csa-Chr1:18437986 1.73E-09 dispersed
Csa07g00235 Csa-Chr7:1863318 Csa01g02115 Csa-Chr1:18437986 5.84E-10 dispersed
Csa07g01186 Csa-Chr7:11652744 Csa01g02115 Csa-Chr1:18437986 4.31E-10 dispersed
Csa02g02445 Csa-Chr2:21557067 Csa01g02115 Csa-Chr1:18437986 1.65E-105 transposed
Csa04g00998 Csa-Chr4:7751656 Csa01g02115 Csa-Chr1:18437986 1.92E-10 transposed
Csa01g02115 Csa-Chr1:18437986 Csa02g00615 Csa-Chr2:4503501 1.36E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30754 PF00643 zf-B_box 6.80E-07 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02115 - - csv:101214816 731.48