Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02131 ATGAGGCAGACAAGGTATATGGAGAGGACGAACTCCATGAGGGAGAAAAGGGGCTTGGAGGGTGGAGAAGATGAGCTGCCAGAGCGAAAGCGACCAGCTTTAGCTAGTGTGATTGTAGAAGCCCTGAAGGTGGACAGTTTACAAAAGCTGTGCTCGTCATTGGAACCAATACTCCGTAGAGTGGTTAGTGAGGAAGTGGAACGTGCTTTGGCTAAGATAGGTCCTGCTAGAATTTCTGGAAGGTCGTCTCCTAAAAGGATCGAAGGTCCTGATGGAAGAAACTTGCAACTTCACTTTAGGTCTAGATTGTCTCTTCCCCTATTCACTGGAGGGAAAGTGGAAGGTGAACAGGGTGCAGCAATTCACGTCGTACTGGTTGATTCCAACACAGGCCATGTAGTAACGTCTGGACAGGAGGCCTTGACTAAATTGGACATTGTCGTACTTGAAGGTGATTTTAACAATGAAGATGATGAAGATTGGACGGAGGAAGAATTTGAAAGTCATGTTGTTAAAGAGCGTGAAGGAAAGAGGCCTCTATTGACTGGTGACCTGCAGGTTACCCTCAAGGAAGGCGTTGGAACACTAGGGGATTTGACCTTCACTGATAATTCAAGTTGGATTAGGAGCAGAAAGTTCCGACTTGGGTTAAAGGTGGCTTCAGGATTTTGTGAAGGTGTACGTATTCGTGAAGCGAAAACTGAAGCTTTTACAGTTAAAGATCACCGAGGAGAATTGTATAAAAAACATTACCCACCTGCATTAAACGATGATGTGTGGAGATTGGAGAAAATTGGAAAGGATGGTTCATTTCACAAGCGTCTTAACAAAAATGGAATATTCACTGTTGAAGACTTTCTCCGAATGGTGGTTCGAGATTCTCAAAAGTTACGGAGTATCCTTGGTAGTGGTATGTCAAATAAAATGTGGGAGGCTCTCCTAGAACATGCTAAGACCTGTGTCCTCAGTGGGAAGCTGCATATTTATTATCCAGAAGAAGCAAGAAATGTTGGTGTTGTTTTTAACAATATCTATGAGCTCAATGGACTGATAACAGGGGAGCAATACTTTCCTGCTGATTCTCTGTCTGATAGCCAGAAGGTTTATGTAGATACATTAGTGAATAAAGCATATGAAAATTGGAATCAAGTTGTAGAGTACGACGGCAAGTCACTTTTGAGCTCTAAGCAGCCTAAGAAGTCAACTGCATCCCGAAATGACTTTCAAGGTGGTCATCTTGACCTTTCTAACACTCTAGATCACGGATCACTTGCCCGCATGCCAGTGTCAGTTCAGCCTCAACAGCCTGTTGTGGATTCAGGACTCTCAGTTGCAGGGTATAATGATAGTACAGCCACAAGATATTCAACCCAGCCTCAGTTTGTGAATTCAACCTCTCGGCCACAGTTTGACAATTCTCCATATACTTCTAATGAATTGATGGGAAATTCTAACCAAGTTCATATTGCGAGAAATGACAATAGTACTTTTGGTTTGGCTCTTGGTCCTCCACAGGCATCATCTTCAGGGTTTCAGGCACTCGGTTCTTCAATGCAGGAATCTAATCTGAATCCATTTGATTGGTCTAACAATAGGGACAAGGGAGTTGACGACTTCTTTTCAGAGGATGAGATTCGTATGAGAAGTCATGAAATGCTTGAAAATGAAGATATGCAACAATTGTTGCGGATGTTTAGCATGGGAGGACATGCATCTGTTAATGGCCATGATGAGGGTTTTTCTTTTCCATCATTCATGCCTTCACCAATGCCAAATTTTGATGATCGTAACCGATCTGGTAAAGCTGTGGTGGGTTGGCTGAAGATAAAAGCTGCAATGAGGTGGGGATTCTTCATCAGGAGGAAAGCAGCTGAGAGACGTGCACAGATTGTCGAGTTGGACGATGAATAG 1911 43.28 MRQTRYMERTNSMREKRGLEGGEDELPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKIGPARISGRSSPKRIEGPDGRNLQLHFRSRLSLPLFTGGKVEGEQGAAIHVVLVDSNTGHVVTSGQEALTKLDIVVLEGDFNNEDDEDWTEEEFESHVVKEREGKRPLLTGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGLKVASGFCEGVRIREAKTEAFTVKDHRGELYKKHYPPALNDDVWRLEKIGKDGSFHKRLNKNGIFTVEDFLRMVVRDSQKLRSILGSGMSNKMWEALLEHAKTCVLSGKLHIYYPEEARNVGVVFNNIYELNGLITGEQYFPADSLSDSQKVYVDTLVNKAYENWNQVVEYDGKSLLSSKQPKKSTASRNDFQGGHLDLSNTLDHGSLARMPVSVQPQQPVVDSGLSVAGYNDSTATRYSTQPQFVNSTSRPQFDNSPYTSNELMGNSNQVHIARNDNSTFGLALGPPQASSSGFQALGSSMQESNLNPFDWSNNRDKGVDDFFSEDEIRMRSHEMLENEDMQQLLRMFSMGGHASVNGHDEGFSFPSFMPSPMPNFDDRNRSGKAVVGWLKIKAAMRWGFFIRRKAAERRAQIVELDDE* 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18554661 18561029 + CsaV3_1G031390.1 Csa01g02131 516628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02131 636 MobiDBLite consensus disorder prediction 395 413 - -
Csa01g02131 636 Pfam Calmodulin binding protein C-terminal domain 325 387 IPR046829 -
Csa01g02131 636 Pfam Calmodulin binding protein central domain 254 320 IPR046830 -
Csa01g02131 636 PANTHER CALMODULIN-BINDING PROTEIN 60 B 5 634 - -
Csa01g02131 636 MobiDBLite consensus disorder prediction 395 415 - -
Csa01g02131 636 Pfam Calmodulin binding protein-like N-terminal domain 95 242 IPR046831 -
Csa01g02131 636 MobiDBLite consensus disorder prediction 1 27 - -
Csa01g02131 636 PANTHER OS02G0177800 PROTEIN 5 634 IPR012416 GO:0005516
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00177 Csa-Chr1:1146544 Csa01g02131 Csa-Chr1:18554661 4.34E-106 dispersed
Csa01g00676 Csa-Chr1:4339659 Csa01g02131 Csa-Chr1:18554661 1.76E-93 dispersed
Csa01g02131 Csa-Chr1:18554661 Csa01g02736 Csa-Chr1:24238435 8.83E-51 dispersed
Csa01g02131 Csa-Chr1:18554661 Csa02g00482 Csa-Chr2:3417962 2.11E-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02131 - - csv:101216741 1232.24