Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g02140 | ATGGCAGCCCTCCAAATTCATGGCACGGAAGCCGAAATCTCTGCAGCGTTTCTAGTAGATCGAATCATTGATCTTCATGAAAGCATCTCGAAGCTTGAAACCCTAAGGCCATGCAAGAAAGTGAACAACCTCTTCACCAACCTAGTGACCTTATGCATTTTGCCTTGTTCAATAGATGTCTCCACATTGCCACCAAATTTACAAGTCATTCGTGAGAGCCTCATAATTTTATGTGGCCAAGCTGAAGGCTTACTCGAGTTAGAATTCTCAACTTTGCTAAGCAAAATCCCAAAACCTCTCAACAACCTCACTTTATTTCCATATTACCAAAACTACATCAAGTTAGCCAACCTTGAAAACAAAATTCTAAATGACAATGGAATTGTCAATCCCAAGAAGGTAGCTTTTGTGGGATCAGGTCCTTTGCCTCTAACTTCAATTATTATGGCCATGCAACACATGAAGGGCACACATTTCGATAACTACGACGTAGACAGTGTGGCGAATGACGTAGCGAGAAAGATCGTGGGGTCAGATTCTGATCTGGAGGGGAGAATGAAGTTTTGCTCTAGTGATATTGTTGATGTAAAAGAAGAGCTTGGAGGCTATGATTGTGTGTTTTTGGCTGCTCTCGTGGGGATGAATAAGGAAGAAAAAGTGAAGATTATAAGGCATTTAAGGAAATATATGAAAGAAGGTGGGATTTTGTTGGTGAGAAGTGCTAAAGGAGGAAGAGCGTTTCTGTATCCTGTGGTTGAAGTTGAAGATTTGGTTGGCTTTGAGATTCTCTCTATTTTTCATCCAACTGATGATGTTGTCAATTCGGTTATCTTAACTCGTAAGTTAGCCTATGATTAA | 858 | 40.44 | MAALQIHGTEAEISAAFLVDRIIDLHESISKLETLRPCKKVNNLFTNLVTLCILPCSIDVSTLPPNLQVIRESLIILCGQAEGLLELEFSTLLSKIPKPLNNLTLFPYYQNYIKLANLENKILNDNGIVNPKKVAFVGSGPLPLTSIIMAMQHMKGTHFDNYDVDSVANDVARKIVGSDSDLEGRMKFCSSDIVDVKEELGGYDCVFLAALVGMNKEEKVKIIRHLRKYMKEGGILLVRSAKGGRAFLYPVVEVEDLVGFEILSIFHPTDDVVNSVILTRKLAYD* | 286 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 18593279 | 18594629 | - | CsaV3_1G031480.1 | Csa01g02140 | 516637 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g02140 | 285 | CDD | AdoMet_MTases | 137 | 238 | - | - | |
Csa01g02140 | 285 | PANTHER | NICOTIANAMINE SYNTHASE 3 | 1 | 283 | IPR004298 | GO:0030410|GO:0030418 | |
Csa01g02140 | 285 | PANTHER | NICOTIANAMINE SYNTHASE | 1 | 283 | - | - | |
Csa01g02140 | 285 | CDD | A4_beta-galactosidase_middle_domain | 192 | 257 | - | - | |
Csa01g02140 | 285 | ProSiteProfiles | Nicotianamine synthase (NAS)-like family profile. | 10 | 285 | IPR004298 | GO:0030410|GO:0030418 | |
Csa01g02140 | 285 | Pfam | Nicotianamine synthase protein | 15 | 282 | IPR004298 | GO:0030410|GO:0030418 | |
Csa01g02140 | 285 | Gene3D | Vaccinia Virus protein VP39 | 14 | 283 | IPR029063 | - | |
Csa01g02140 | 285 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 123 | 240 | IPR029063 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02140 | Csa-Chr1:18593279 | Csa02g00502 | Csa-Chr2:3536310 | 5.98E-92 | dispersed | |
Csa01g02140 | Csa-Chr1:18593279 | Csa01g02710 | Csa-Chr1:24042009 | 8.78E-102 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g02140 | K05953 | - | csv:101209464 | 561.992 |