Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02140 ATGGCAGCCCTCCAAATTCATGGCACGGAAGCCGAAATCTCTGCAGCGTTTCTAGTAGATCGAATCATTGATCTTCATGAAAGCATCTCGAAGCTTGAAACCCTAAGGCCATGCAAGAAAGTGAACAACCTCTTCACCAACCTAGTGACCTTATGCATTTTGCCTTGTTCAATAGATGTCTCCACATTGCCACCAAATTTACAAGTCATTCGTGAGAGCCTCATAATTTTATGTGGCCAAGCTGAAGGCTTACTCGAGTTAGAATTCTCAACTTTGCTAAGCAAAATCCCAAAACCTCTCAACAACCTCACTTTATTTCCATATTACCAAAACTACATCAAGTTAGCCAACCTTGAAAACAAAATTCTAAATGACAATGGAATTGTCAATCCCAAGAAGGTAGCTTTTGTGGGATCAGGTCCTTTGCCTCTAACTTCAATTATTATGGCCATGCAACACATGAAGGGCACACATTTCGATAACTACGACGTAGACAGTGTGGCGAATGACGTAGCGAGAAAGATCGTGGGGTCAGATTCTGATCTGGAGGGGAGAATGAAGTTTTGCTCTAGTGATATTGTTGATGTAAAAGAAGAGCTTGGAGGCTATGATTGTGTGTTTTTGGCTGCTCTCGTGGGGATGAATAAGGAAGAAAAAGTGAAGATTATAAGGCATTTAAGGAAATATATGAAAGAAGGTGGGATTTTGTTGGTGAGAAGTGCTAAAGGAGGAAGAGCGTTTCTGTATCCTGTGGTTGAAGTTGAAGATTTGGTTGGCTTTGAGATTCTCTCTATTTTTCATCCAACTGATGATGTTGTCAATTCGGTTATCTTAACTCGTAAGTTAGCCTATGATTAA 858 40.44 MAALQIHGTEAEISAAFLVDRIIDLHESISKLETLRPCKKVNNLFTNLVTLCILPCSIDVSTLPPNLQVIRESLIILCGQAEGLLELEFSTLLSKIPKPLNNLTLFPYYQNYIKLANLENKILNDNGIVNPKKVAFVGSGPLPLTSIIMAMQHMKGTHFDNYDVDSVANDVARKIVGSDSDLEGRMKFCSSDIVDVKEELGGYDCVFLAALVGMNKEEKVKIIRHLRKYMKEGGILLVRSAKGGRAFLYPVVEVEDLVGFEILSIFHPTDDVVNSVILTRKLAYD* 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18593279 18594629 - CsaV3_1G031480.1 Csa01g02140 516637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02140 285 CDD AdoMet_MTases 137 238 - -
Csa01g02140 285 PANTHER NICOTIANAMINE SYNTHASE 3 1 283 IPR004298 GO:0030410|GO:0030418
Csa01g02140 285 PANTHER NICOTIANAMINE SYNTHASE 1 283 - -
Csa01g02140 285 CDD A4_beta-galactosidase_middle_domain 192 257 - -
Csa01g02140 285 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 10 285 IPR004298 GO:0030410|GO:0030418
Csa01g02140 285 Pfam Nicotianamine synthase protein 15 282 IPR004298 GO:0030410|GO:0030418
Csa01g02140 285 Gene3D Vaccinia Virus protein VP39 14 283 IPR029063 -
Csa01g02140 285 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 123 240 IPR029063 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02140 Csa-Chr1:18593279 Csa02g00502 Csa-Chr2:3536310 5.98E-92 dispersed
Csa01g02140 Csa-Chr1:18593279 Csa01g02710 Csa-Chr1:24042009 8.78E-102 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02140 K05953 - csv:101209464 561.992