Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02142 ATGGCTGCCGCCGACGCTTCCTCACCGGAATTCATATTCCGTTCAAAACTCCCTGAAATTCCCATCTCCACCCATCTCCCATTGCACACATATTGTTTCGAAAATATCTCCGAATTCAAACACCGTCCATGTCTAATCAACGCCGCCACCGGCCACATCTACACCTACGGCGAAGTTCAAGCAACATCCCGCCGAGTCGCCGCAGGTCTCCACAAGTTAGGTATCGGAAAAGGTGACGTCATCATGCTACTCCTGCAAAACACTCCAGAGTTCGTTTTAGCTTTCCTAGGAGCGTCCTACCTCGGCGCCGCTGCCACCATGGCCAACCCATTTTTCATGCAGTCGGAAATCGCAAAACAAGCTGTGTCATCTGGCGCCAAGGTGATCATAACCCAAGCTGCGTTTGCAGAAAAAGTGAAAAACCTATCTCAGGAAAATGAGATGATCATTAAAGTAATATTCATCGACGACAATGATCCTCCGCAATTTTCGTCGTTGATTGAGGACGTAGCAAAAGAGGAGGAGTTGGAAATGGGAGATGTGAAAATCAGTCCAGAGGACGTCGTTGCGTTGCCATATTCGTCTGGAACCACCGGTCTTCCAAAAGGAGTTATGCTGACTCATAAAGGATTAGTGACCAGCGTGGCACAACAGGTGGATGGTGAAAATCCACACCTCCATATCCGAAGCGACGATGTTGTTTTGTGCCTTCTTCCTTTATTTCACATATATTCTCTGAACTCAATTATGATGTGTGCGTTACGAGTGGGAGCTGCGATTTTACTCGTTCAAAAGTTCGACGTTAATTCCCTTGTAGAATTGGTTTCTAAATACAAAGTCACCTTTGCACCGTTTGTGCCTCCTATTGTACTTGCAATTGCCAAAAGTCCAGCTGTTGACCATTTTGACATGTCGTCTTTGCGTATCGTGTTGTCGGGAGCTGCACCATTGGGGAAGAATCTTGAAGATGCCTTTAGAGCCAAGCTTCCCCATGTCATTCTTGGCCAGGGATATGGAATGACTGAGGCGGGGTCAGTGATGACGATGTCGTTAGCCTTTGTAAAGGAGGGGTTCGGGATAAAATCGGGAGGTTGCGGAACAATAATGAGAAATTCCGAAATGAAGATACTAAACCTGCAAACGGGAGAGTCTCTTCCCAGGAATCAAACTGGGGAGATTTGTATTAGAAGTTCTCAAATGATGAAAGGATACCTCAACGACGAAGATGCCACGAAGGCTATAATCGACGAAGACGGATGGCTGCACACCGGCGACATAGGTTTCGTCGATGACGACGACGAGCTCTTCATTGTCGATCGTCTCAAGGAACTGATCAAATATAAAGGCTTCCAGGTAGCCCCGGCGGAGTTGGAAGCCCTGCTTATATCCCACGCCCATATCGCCGACGCTGCTGTTATACCTATGAATGATGAAGTTGCTGGGGAGGTTCCGGTTGCGTTCATTGTCCGGTTTGACGGCTCCAACATCACTGAGGATGAAATTAAGCAATTCATCTCCAAACAGGTTGTGTTTTATAAGAGGATTAATCGTGTCTTCTTCGTGGATTCCATTCCTAAAAGTCCTTCTGGCAAAATCTTGAGGAGACAACTTAGAGCTTTGCTCGCAGCCAGTATTTCTTAA 1641 46.8 MAAADASSPEFIFRSKLPEIPISTHLPLHTYCFENISEFKHRPCLINAATGHIYTYGEVQATSRRVAAGLHKLGIGKGDVIMLLLQNTPEFVLAFLGASYLGAAATMANPFFMQSEIAKQAVSSGAKVIITQAAFAEKVKNLSQENEMIIKVIFIDDNDPPQFSSLIEDVAKEEELEMGDVKISPEDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPHLHIRSDDVVLCLLPLFHIYSLNSIMMCALRVGAAILLVQKFDVNSLVELVSKYKVTFAPFVPPIVLAIAKSPAVDHFDMSSLRIVLSGAAPLGKNLEDAFRAKLPHVILGQGYGMTEAGSVMTMSLAFVKEGFGIKSGGCGTIMRNSEMKILNLQTGESLPRNQTGEICIRSSQMMKGYLNDEDATKAIIDEDGWLHTGDIGFVDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHAHIADAAVIPMNDEVAGEVPVAFIVRFDGSNITEDEIKQFISKQVVFYKRINRVFFVDSIPKSPSGKILRRQLRALLAASIS* 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18604088 18612671 - CsaV3_1G031500.1 Csa01g02142 516639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02142 546 Gene3D - 3 441 IPR042099 -
Csa01g02142 546 Pfam AMP-binding enzyme C-terminal domain 456 531 IPR025110 -
Csa01g02142 546 Pfam AMP-binding enzyme 34 447 IPR000873 -
Csa01g02142 546 ProSitePatterns Putative AMP-binding domain signature. 191 202 IPR020845 -
Csa01g02142 546 Gene3D - 442 544 IPR045851 -
Csa01g02142 546 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 7 540 - -
Csa01g02142 546 SUPERFAMILY Acetyl-CoA synthetase-like 23 543 - -
Csa01g02142 546 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 540 - -
Csa01g02142 546 CDD 4CL 22 537 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02142 Csa02g00587 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02142 Csa-Chr1:18604088 Csa03g02957 Csa-Chr3:28139017 0 dispersed
Csa05g02765 Csa-Chr5:28373355 Csa01g02142 Csa-Chr1:18604088 3.03E-125 dispersed
Csa01g02142 Csa-Chr1:18604088 Csa02g00587 Csa-Chr2:4235452 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02142 K01904 - csv:101218077 1044.26