Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02157 ATGAATAACTCTTCGTCTTCTTCTTCTTCTTCTCCACCTTCTTCTTCAAATTGGCTTGCCTTTTCTCTTTCTAATCATCCCGACTCTCTTTCTCTCTTCCATCCTAATCCTAATCCTAATCCCAATCCTATTCCTACTGATCTTTCTATCTTCTCCCCCACCGTCCCCAAGCTTGAGCACTTTCTCCGGCCACCGCCGCCATCTCACTACTCTCCTCATCATTCTCAGATTTGTGATTCTGATCTCAAAACAATAGCTGCCAGCTTTCTCCGTGGACCACCCACCTCTCATTTCCCTGACCAACACTTTCAACATCTCCACGCGCCACCGCCGCCGCCGCCTACTCAACCCGATACCCCTCCGCCCCCTCCCCCTAAGAAGGCTGTTGATACTTTTGGCCAACGCACTTCTATTTACCGTGGTGTCACTAGGCATAGATGGACTGGACGATATGAAGCCCATTTGTGGGATAATAGTTGCAGAAGAGAAGGTCAGAGTAGAAAAGGAAGACAAGTTTACTTGGGTGGTTATGACAAAGAAGAAAAAGCAGCCAGAGCTTATGATCTCGCAGCTCTCAAGTACTGGGGTCCGACCACCACCACCAACTTTCCGGTGTCCAACTACGAAAAAGAACTGGAGGAGATGAAGAATATGACCAGACAAGAATTTGTAGCTTCGTTAAGAAGGAGAAGCAGTGGTTTTTCTAGAGGTGCTTCTATCTACAGAGGTGTAACTAGGCACCATCAACATGGCAGATGGCAAGCAAGAATCGGAAGGGTTGCTGGAAATAAAGATCTCTATCTTGGAACATTCAGCACACAAGAAGAAGCAGCCGAGGCCTATGATATAGCAGCCATAAAATTCCGAGGGCTAAACGCGGTCACAAACTTCGACATTAGTCGTTACGACGTTAAAAGCATTGCTAGTAGCAACCTTCCCATAGGAGGGATGTCTGGCGCCAAATCCAAAACCACCTCTGATTCTGCTGCTTCCGATGGTGGCAGCCGATCGACCGACGAACGTGATGTCCACCATTCTCCTCCATCTTCAAGTACCTCAACTTTCATCTCCTCGTCATCACAGCCAAACAACAACTCCTCGAGTACTCTAAGCTTCACAATGCCGATCAAACAAGACCCATCGGATCAATACTGGTCCATCCTCAGCTATAACCCCGATGCCTTCAATGCAAATCTTCCCAAACCGGACGATAATAATGTTCCAGTACCATTGTTTCAACAACCTGAATCCACAATGTTTCCCGCCATCACGGAGCTAGGATCGAGCGGGTCAGGGATGACGGAAGGCGGGATGTATGTACAACAACAGCAACAGTATGGAACGCCAATGGCATTTGCAAAAGCAAGTTTTTTTCAGACACCAATTTTTGGTATGGAATGA 1401 47.25 MNNSSSSSSSSPPSSSNWLAFSLSNHPDSLSLFHPNPNPNPNPIPTDLSIFSPTVPKLEHFLRPPPPSHYSPHHSQICDSDLKTIAASFLRGPPTSHFPDQHFQHLHAPPPPPPTQPDTPPPPPPKKAVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSNYEKELEEMKNMTRQEFVASLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIASSNLPIGGMSGAKSKTTSDSAASDGGSRSTDERDVHHSPPSSSTSTFISSSSQPNNNSSSTLSFTMPIKQDPSDQYWSILSYNPDAFNANLPKPDDNNVPVPLFQQPESTMFPAITELGSSGSGMTEGGMYVQQQQQYGTPMAFAKASFFQTPIFGME* 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18716067 18719027 + CsaV3_1G031650.1 Csa01g02157 516654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02157 466 Gene3D AP2/ERF domain 138 206 IPR036955 GO:0003700|GO:0006355
Csa01g02157 466 Gene3D AP2/ERF domain 240 300 IPR036955 GO:0003700|GO:0006355
Csa01g02157 466 SUPERFAMILY DNA-binding domain 239 300 IPR016177 GO:0003677
Csa01g02157 466 ProSiteProfiles AP2/ERF domain profile. 240 298 IPR001471 GO:0003700|GO:0006355
Csa01g02157 466 MobiDBLite consensus disorder prediction 347 374 - -
Csa01g02157 466 PRINTS Ethylene responsive element binding protein signature 139 150 IPR001471 GO:0003700|GO:0006355
Csa01g02157 466 PRINTS Ethylene responsive element binding protein signature 280 300 IPR001471 GO:0003700|GO:0006355
Csa01g02157 466 MobiDBLite consensus disorder prediction 313 333 - -
Csa01g02157 466 ProSiteProfiles AP2/ERF domain profile. 138 204 IPR001471 GO:0003700|GO:0006355
Csa01g02157 466 Pfam AP2 domain 240 290 IPR001471 GO:0003700|GO:0006355
Csa01g02157 466 Pfam AP2 domain 138 196 IPR001471 GO:0003700|GO:0006355
Csa01g02157 466 SUPERFAMILY DNA-binding domain 137 206 IPR016177 GO:0003677
Csa01g02157 466 MobiDBLite consensus disorder prediction 105 128 - -
Csa01g02157 466 SMART rav1_2 240 304 IPR001471 GO:0003700|GO:0006355
Csa01g02157 466 SMART rav1_2 138 210 IPR001471 GO:0003700|GO:0006355
Csa01g02157 466 MobiDBLite consensus disorder prediction 1 21 - -
Csa01g02157 466 CDD AP2 137 206 IPR001471 GO:0003700|GO:0006355
Csa01g02157 466 MobiDBLite consensus disorder prediction 90 131 - -
Csa01g02157 466 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 124 353 - -
Csa01g02157 466 CDD AP2 239 300 IPR001471 GO:0003700|GO:0006355
Csa01g02157 466 MobiDBLite consensus disorder prediction 313 374 - -
Csa01g02157 466 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 124 353 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02157 Csa-Chr1:18716067 Csa02g00816 Csa-Chr2:7285623 4.21E-12 dispersed
Csa01g02157 Csa-Chr1:18716067 Csa06g03048 Csa-Chr6:26200005 1.20E-122 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30758 PF00847 AP2 3.30E-13 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02157 K09285 - csv:101210453 815.068