Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02159 ATGCCTTCCGATTCTTTATCTGAAGGAGCTGCTCTCGAACCATTAAAATCCAGTATGATGAGTCTGGAGAAGAAAAGGAATTTGGTCTATGAAATATCAGATCAGCCACATGCTCCTGAACTGCTTCAGTCCTGGAGTCGACAAGAGATTTTAGAGATCCTGTGTGCAGAGATGGGAAAAGAGAGGAAATATACTGGATTAACAAAACTAAAAATAATTGAGAACCTTCTGAAAATTGTTGGTAAAAAGAAATCAGGGTCAACTGAGGATGTAACAGACCTCGACAATCAGTCTTCTCCTTGTCCTTCTCCAAATATTTCCAAACGGCAAAGAAAAATTGATCAGCCAGCACGGCTTCCTGTTCCTGTAAACAATAGTCCAATCAGTAACACTAGGACTGACTCAAATATTGCAGTGTACTGCAGAAATTCGGCATGCAAAGCTAACATAAATCAAGATGATAAATTTTGCAAGAGGTGTTCATGCTGCATCTGTTATCAGTATGATGATAATAAGGATCCTAGTCTGTGGTTAAGTTGCAGCTCTGACCCACCATTTCAAAGCACTTCATGTCGTATGTCATGCCATCTTGAATGTGCACTGAAGCATGAAAAATCTGGGATTTCTAGAGGACAGCAAACTGGGATTGAAGGGACTTTCTGTTGTGTATCTTGTGGAAAAGTCAATGACTTGATTGGGTGTTGGAGAAAACAATTGATGAAGGCAAAGGAAACAAGACGGGTGGCTATCCTGTGTTACCGCATCTCTTTAAGCAAAAAGCTTTTGAGTGAAGATGAAAAGTTTCAAGACGTTTATCAGATTGTGGATGAGGCTGTGAAGAAACTTGAAGCTGAGGTGGGTCCTTTGGCTGGTGTACCAGTCGGTACGGGCAGAGGAATAGTGAACAGGCTTTCTTCAGGACCAGAGGTTCAGAAACTCTGCTCGTTAGCCATCGATTCGCTCGACACCCTGCTCTCCACAAAGATCTTACATCACTTGCCCAGTTCCATGATACAAGATACTAATTTGGTAGCTACAAACTTCTTAAGGTTCGAAGATGTTGATGCAACATACGTTGCAGTGGTTGTGGGTACTGAAGATGTTTCTTGTGGAGAAACCATTGGTTACAGGCTATGGCATCGAAAGGCAGGCGAAACAGATTACCCTATCGAGCCAACTTGCACCTTGTCTCAACCAAATTTGAGGTTTGTCGTCCGAGGACTAACCCCATCTTCAGAGTACTATTTCAAAGCCATTTCCTTTGATGGGACAGGCGATTTGGGGACATGTGAAGTTCAAGTCTCAACTGCTATTCCTCGGGAGGATGACGCAAGTTGCTTGGTGATTGAAAGAAGTCAGAGTCCTGTGACCAACTTCAGTGAGCTCTCTAATCCTTCTTCCGTAGAAGATGAAACTAACAATATAGTGCCCTGTAGTGACCAGACCGATAGTCAAACAGGGAGCTTTCTTTCTTATTGCAAGGAGTCTAACAAGATTATCACTACTAACCAGTCTGAGGATAGAATAAACTGCACAGATGTCAGTGGAATAGGAACAGCTAAAGATTCTGTTTCGTCGTTGGATGAGGAACACGTTACAAGAAAAAGTAGCATGCTTCCTGATCCCAATGTTTCAAAACTTGAAGACAGGCATTCTTCTCAAGTCCAAATCATTGAAGGTACAACAAGCATGAACAAGGGCTCGAATTCTGCCATTCAACAAGGAACTAAATCCACACCATTTGTAAGCAGCTCCGAGGCTGGATTGCCAGTTACTCCTTGCAAAATGGAAATACTCAAGGATGTTCTCGGAAGGAGTGGCCGATCGAAGTCCAGCACCAAGGATCGAGATGATAAGGGATCTGGAGGAGAGGAACTCCGAAATGGCAGCACATCTAAGAAGAGAAATGCAGAGAGACAAGATGTAGATTGTACTGCAAACGGTATTTCGGATAAGGATTTCGAGTATTATGTAAAGTTGATTAGATGGCTAGAATGCGAAGGACACATAGAGAAGAACTTCAGACAAAAATTCTTAACTTGGTATAGCTTGAGAGCGACAACACAAGAAGTTAGGATAGTGAAGGCCTTTGTTGATAACTTCATTGAAGATCCATCAGCTCTTGCCGAGCAACTTGTGGATACGTTTTCGGAATGCATTTCAAGCAAGAAAACATGTGCTGTGCCTTCTGGATTTTGTATGAAGCTTTGGCATTGA 2217 42.35 MPSDSLSEGAALEPLKSSMMSLEKKRNLVYEISDQPHAPELLQSWSRQEILEILCAEMGKERKYTGLTKLKIIENLLKIVGKKKSGSTEDVTDLDNQSSPCPSPNISKRQRKIDQPARLPVPVNNSPISNTRTDSNIAVYCRNSACKANINQDDKFCKRCSCCICYQYDDNKDPSLWLSCSSDPPFQSTSCRMSCHLECALKHEKSGISRGQQTGIEGTFCCVSCGKVNDLIGCWRKQLMKAKETRRVAILCYRISLSKKLLSEDEKFQDVYQIVDEAVKKLEAEVGPLAGVPVGTGRGIVNRLSSGPEVQKLCSLAIDSLDTLLSTKILHHLPSSMIQDTNLVATNFLRFEDVDATYVAVVVGTEDVSCGETIGYRLWHRKAGETDYPIEPTCTLSQPNLRFVVRGLTPSSEYYFKAISFDGTGDLGTCEVQVSTAIPREDDASCLVIERSQSPVTNFSELSNPSSVEDETNNIVPCSDQTDSQTGSFLSYCKESNKIITTNQSEDRINCTDVSGIGTAKDSVSSLDEEHVTRKSSMLPDPNVSKLEDRHSSQVQIIEGTTSMNKGSNSAIQQGTKSTPFVSSSEAGLPVTPCKMEILKDVLGRSGRSKSSTKDRDDKGSGGEELRNGSTSKKRNAERQDVDCTANGISDKDFEYYVKLIRWLECEGHIEKNFRQKFLTWYSLRATTQEVRIVKAFVDNFIEDPSALAEQLVDTFSECISSKKTCAVPSGFCMKLWH* 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18737982 18747247 + CsaV3_1G031670.1 Csa01g02159 516656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02159 738 MobiDBLite consensus disorder prediction 91 110 - -
Csa01g02159 738 CDD FN3 349 426 IPR003961 GO:0005515
Csa01g02159 738 Pfam PHD - plant homeodomain finger protein 141 259 IPR032881 -
Csa01g02159 738 MobiDBLite consensus disorder prediction 549 586 - -
Csa01g02159 738 SUPERFAMILY Fibronectin type III 368 425 IPR036116 GO:0005515
Csa01g02159 738 MobiDBLite consensus disorder prediction 604 640 - -
Csa01g02159 738 CDD PHD_VIN3_plant 161 225 - -
Csa01g02159 738 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 738 - -
Csa01g02159 738 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 738 IPR044514 GO:0010048|GO:0040029
Csa01g02159 738 MobiDBLite consensus disorder prediction 86 127 - -
Csa01g02159 738 MobiDBLite consensus disorder prediction 525 588 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02159 Csa02g00638 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02072 Csa-Chr1:17777579 Csa01g02159 Csa-Chr1:18737982 4.75E-111 dispersed
Csa01g02159 Csa-Chr1:18737982 Csa02g00143 Csa-Chr2:1000331 6.96E-23 dispersed
Csa02g02200 Csa-Chr2:19811478 Csa01g02159 Csa-Chr1:18737982 3.04E-14 transposed
Csa01g02159 Csa-Chr1:18737982 Csa02g00638 Csa-Chr2:4736173 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02159 - - csv:101220456 1491.09