Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02172 ATGGCGGCGACGGAGGCAGAGGGAAATAAGGGTGGTGGGTTGAAGAAAAGTTACTTTGATGTCTTGGGGATTTGTTGTTCTTCAGAAATTCCGGTGATTGAGAATATATTGAAGGATATTGAAGGGATTAAAGAGATTAGAGTGATTGTTGCAACAAGAACTGTCATTGTTCTTCATGATGATCTTCTCGTTTCCCAAGCACAAATTGTTAAAGCCCTGAACCAAGCAAGATTTGAAGCGAACGTTAGAGCGTACGGAGATCAGAAAGATCACCGGAAAAAATGGCCGAGCCCGTATGCGGTGGCCAGTGGGCTGTTGCTGCTCTTGTCGTTACTCAAATATGTGAATCCTATTTTTCGATGGGTCGCTTTAGCCGCCGTCGCCGCCGGAATCTTGCCCATTGTCCTCAAAAGCTTCGCCGCCGTTCGCCATCTCAGAATCGACATCAATATTCTTGCTTTAATTGCAGTAATCGGAACAATTGTGCTGAAGGATTACTTGGAAGCAGCCACCATCGTCTTCCTCTTCACCATCGCCGAATGGCTCGAGTCCAGAGCCGCCCACAAGGCCAACGCCGTCATGTCATCCCTTCTAAGTATTGCTCCTCAGAAAGCGGTTCTAGCCGACACTGGCGAAGTTGTCGGCGCCGACGAGGTCAAATTAGGGACTCTTCTGGCTGTGAAGGCCGGTGAGGACATACCCATTGATGGAATCGTTGTGGAAGGAAAATGTGAAGTGGATGAGAAAACACTTACAGGCGAATCTTTTCCTGTTCCCAAACAAAAGAATTCCACTGTTTGGGCTGGTACCATTAATCTAAATGGCTATGTTACTGTGAAGACTACTGCCCTTGCTGAAGACTGTGTGGTGGCCAAAATGGCTAAGCTGGTTGAGGAGGCCCAGAACAATAAATCTAGAACTCAAAGGTTCATTGACAAATGTGCCAAATTCTATACTCCAGCTGTTATAATCATATCAACTTGCATAGTAGTGATTCCACTTGCTTTGAGACTTCCCAATCGCAGCCATTGGTTTCACTTGGCCTTGGTTGTGTTAGTAAGTGCGTGTCCCTGTGCACTCATCCTTTCCACTCCTGTTGCGTCTTTCTGTGCACTTACTAAGGCAGCAACATCTGGTCTTTTAATCAAAGGAGGTGACTACCTTGAAACACTTGGCAAAATTAAGATCATGGCCTTTGATAAAACTGGGACAATAACAAGAGGTGAATTTATGGTGACTGAATTTCAAGTTCTTGATAAGGACAATATAAGCTTAGACACATTGCTGTACTGGGTGTCGAGCATCGAGAGCAAGTCCAGTCATCCAATGGCAGCTGCACTTGTTGACCATGGAAGATCACTATCCATTGATCCCAAACCTGAAAATGTGGACGACTTTCAAAATTTTCCTGGAGAAGGTGTTCATGGGAGAATTGATGGGAAAGACATCTATATTGGAAATCGAAAAATTGCTACAAGAGCCAACTGCGCAACAGTCCCAGAGATCAAAGATGAAGCAAAGGATGGGAGGACTGTTGGATACATATTCTGTGGAACTATTGCCGCTGGAGTCTTTAGTCTGTCTGATTCGTGTAGAACAGGGGCTAAAGAGGCCATGGATGAGCTTAGATCTCTCGGTATAAAAACAGCCATGCTCACTGGAGACAGTTCTGCAGCAGCCTTGCAAGCACAAAAAGAATTGGGAAAGGCTTTACAAGCAGTTCATGCCGAACTTCTACCTCAAGACAAGACAAGGCTTATCAATGACTTCAAAAAGGAGGGGCCAACAGCCATGATTGGAGATGGTCTAAACGATGCCCCTGCCTTGGCCACAGCTGATATTGGCATATCAATGGGAATCTCAGGTTCAGCCCTCGCAATAGAAACTGGAGATGTAATTTTAATGACTAATGATATCAGGAAAGTTCCAAAAGCCATTCGACTTGCAAGAAGAGCTAATAATAAAGTAATTGAAAATGTGATTCTATCCGTTGTTCCTAGGATTGCTATACTTGGCCTGGCATTTGGTGGTCATCCACTTGTTTGGGCAGCAGTTCTTGCTGATGTTGGTGCCTGTGTGCTAGTTATCCTCAACAGTATGCTCCTGCTGCGAGGAACAGACGGACACAAAGGGAAGAAAGCTGGCAAGTTTTCTGCTACTCATGGTTCCTCCAAACATAAATGTTGTCACGTTAGCAGCCATTCAGATGAATGTAGTGGTCACACCCATGATCATGGTTGCAACCATCGCAGTTCTCACTCTTCTAGTCATAGTCACCATCACCATCACCATCACCATGAGCACGAGGACTGTGGCTCTCTCAAGAATACTCATGATGGTTGTTTACAAAAGAATCATCCCTCCATGTGTGATTCCAAGTTGAAAAATTCAAGTTCATGCAAGAAAAGTAAACTCATGAACCCAAGTTCTAAGATAGATGGTTCTACCGGGTGTGTAAAACTCTGTGAACATGATCACACCCATGATCACGGGTGCAGTGACGGCTCGGACTCTTCTAGTCATAGTCATCATCAACATCACCACCACCATCATCATGAGCACGAGGATTGCCACTCGCTCGAGAAAACTCATGATGTTTGTTTACCTCAGAATCATGCTTCCAAGTGTGATTCCAGGTCGAAAAATTTGAGTTCGTTCAACGAAGGTAAACACATAGACTCATGTTCTAAGGTAGATGGTTCTACCGGTAGTGTACAACTCTGTGAACATGATCACATGCATGATCATGGGTGCAACACCGACAGTACTGACTCTTCTAGTCATAGTCACCACCACCATTATGAGCACGAGGACTGTGGTTCTCTCAAGAAAACTCATGATGGTTGCGTACTTCAGAATTGTGCTTCAAAGTGTGATTCCGGGATGAAATCTTCAAGTTCATGCAAGAAAAGTAAACTCGTGGATTCAAGTTCTAAGGTAGATGATTCTGCAAGCAGTCTAAAACCCTGTGAACATGGACATATCTGTAACGATCAGCCTGCTGAACACGACCACCATCCTTATTCTTCATGCACTGATCATCATGCCAAGGATGAACTCTGCTCTCCAGAGAATACACAAGAGTTTTGCTCGTTTCAGAAGTGTGCATCAAATTCATGTGAGAAAATCAAGTGCACAAGCTCACCCGCAAGCCACGATGGATCTGCTGTGATTGTTGAGCTCGATGAAAGTGGATGTTGTACTCATAATACCCAATCTGCTCAACATGATCATGACATCCAAAGTCCCAAATGTGATTTTGATGATAGCCACTCACCCAGTCTTGAACATCATATTAGTAATGGTTGTTGCTCTCAAAAGAATACTCACAAGGATTTTTTATCTCATCCAATGCGTGATTCTGAAACCTGCAAGGAAGGCGTTCATCTTCATTGTAAAGCATCAAATGAAGATAATGGAGCAATCAACAATACTGTAAATATCAAGCTTGAAGCAGACCATTCGAACTCTAAACGTGGCAACACTAGTAATAAGCCAATGGAAAACAGAGAGACAAACAACTGTAAAAGCTGCAGAAGGGGAAGTTCACAATTCAAAATTGGAAAATCTTGTGCAGGCTTGAATAAGAGAGAAGTGGGTGGGTGTTGTAAGAGCTACATGAAGGAGTGTTGTAGGAAGCATGGCGATATCAGAATGGCAGTTCGTGGAGGCTTAAACGAAATCATCATAGAATAG 3696 43.89 MAATEAEGNKGGGLKKSYFDVLGICCSSEIPVIENILKDIEGIKEIRVIVATRTVIVLHDDLLVSQAQIVKALNQARFEANVRAYGDQKDHRKKWPSPYAVASGLLLLLSLLKYVNPIFRWVALAAVAAGILPIVLKSFAAVRHLRIDINILALIAVIGTIVLKDYLEAATIVFLFTIAEWLESRAAHKANAVMSSLLSIAPQKAVLADTGEVVGADEVKLGTLLAVKAGEDIPIDGIVVEGKCEVDEKTLTGESFPVPKQKNSTVWAGTINLNGYVTVKTTALAEDCVVAKMAKLVEEAQNNKSRTQRFIDKCAKFYTPAVIIISTCIVVIPLALRLPNRSHWFHLALVVLVSACPCALILSTPVASFCALTKAATSGLLIKGGDYLETLGKIKIMAFDKTGTITRGEFMVTEFQVLDKDNISLDTLLYWVSSIESKSSHPMAAALVDHGRSLSIDPKPENVDDFQNFPGEGVHGRIDGKDIYIGNRKIATRANCATVPEIKDEAKDGRTVGYIFCGTIAAGVFSLSDSCRTGAKEAMDELRSLGIKTAMLTGDSSAAALQAQKELGKALQAVHAELLPQDKTRLINDFKKEGPTAMIGDGLNDAPALATADIGISMGISGSALAIETGDVILMTNDIRKVPKAIRLARRANNKVIENVILSVVPRIAILGLAFGGHPLVWAAVLADVGACVLVILNSMLLLRGTDGHKGKKAGKFSATHGSSKHKCCHVSSHSDECSGHTHDHGCNHRSSHSSSHSHHHHHHHHEHEDCGSLKNTHDGCLQKNHPSMCDSKLKNSSSCKKSKLMNPSSKIDGSTGCVKLCEHDHTHDHGCSDGSDSSSHSHHQHHHHHHHEHEDCHSLEKTHDVCLPQNHASKCDSRSKNLSSFNEGKHIDSCSKVDGSTGSVQLCEHDHMHDHGCNTDSTDSSSHSHHHHYEHEDCGSLKKTHDGCVLQNCASKCDSGMKSSSSCKKSKLVDSSSKVDDSASSLKPCEHGHICNDQPAEHDHHPYSSCTDHHAKDELCSPENTQEFCSFQKCASNSCEKIKCTSSPASHDGSAVIVELDESGCCTHNTQSAQHDHDIQSPKCDFDDSHSPSLEHHISNGCCSQKNTHKDFLSHPMRDSETCKEGVHLHCKASNEDNGAINNTVNIKLEADHSNSKRGNTSNKPMENRETNNCKSCRRGSSQFKIGKSCAGLNKREVGGCCKSYMKECCRKHGDIRMAVRGGLNEIIIE* 1232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18849770 18856924 + CsaV3_1G031800.1 Csa01g02172 516669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02172 1231 SUPERFAMILY HAD-like 398 700 IPR036412 -
Csa01g02172 1231 SUPERFAMILY Calcium ATPase, transduction domain A 212 297 IPR008250 -
Csa01g02172 1231 Gene3D - 409 531 IPR023299 GO:0000166
Csa01g02172 1231 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED 4 721 - -
Csa01g02172 1231 SFLD C1.7: P-type atpase like 381 651 - -
Csa01g02172 1231 SFLD p-type atpase 381 651 IPR044492 -
Csa01g02172 1231 Pfam E1-E2 ATPase 208 376 - -
Csa01g02172 1231 CDD P-type_ATPase_HM 99 701 - -
Csa01g02172 1231 Gene3D - 187 301 - -
Csa01g02172 1231 MobiDBLite consensus disorder prediction 790 809 - -
Csa01g02172 1231 SUPERFAMILY Calcium ATPase, transmembrane domain M 149 392 IPR023298 -
Csa01g02172 1231 MobiDBLite consensus disorder prediction 740 771 - -
Csa01g02172 1231 ProSitePatterns Hypothetical cof family signature 2. 599 621 - -
Csa01g02172 1231 ProSitePatterns E1-E2 ATPases phosphorylation site. 400 406 IPR018303 -
Csa01g02172 1231 TIGRFAM ATPase-IB2_Cd: cadmium-translocating P-type ATPase 149 492 - -
Csa01g02172 1231 CDD HMA 19 80 IPR006121 GO:0046872
Csa01g02172 1231 Gene3D - 389 650 IPR023214 -
Csa01g02172 1231 SUPERFAMILY HMA, heavy metal-associated domain 12 86 IPR036163 GO:0046872
Csa01g02172 1231 MobiDBLite consensus disorder prediction 833 855 - -
Csa01g02172 1231 MobiDBLite consensus disorder prediction 1152 1175 - -
Csa01g02172 1231 MobiDBLite consensus disorder prediction 752 766 - -
Csa01g02172 1231 Gene3D - 13 84 - -
Csa01g02172 1231 Pfam haloacid dehalogenase-like hydrolase 394 613 - -
Csa01g02172 1231 ProSitePatterns Anaphylatoxin domain signature. 1177 1211 IPR000020 GO:0005576
Csa01g02172 1231 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 172 677 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa01g02172 1231 ProSiteProfiles Heavy-metal-associated domain profile. 16 82 IPR006121 GO:0046872
Csa01g02172 1231 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 4 721 - -
Csa01g02172 1231 MobiDBLite consensus disorder prediction 1159 1175 - -
Csa01g02172 1231 PRINTS P-type cation-transporting ATPase superfamily signature 247 261 - -
Csa01g02172 1231 PRINTS P-type cation-transporting ATPase superfamily signature 398 412 - -
Csa01g02172 1231 PRINTS P-type cation-transporting ATPase superfamily signature 545 555 - -
Csa01g02172 1231 PRINTS P-type cation-transporting ATPase superfamily signature 599 618 - -
Csa01g02172 1231 PRINTS P-type cation-transporting ATPase superfamily signature 623 635 - -
Csa01g02172 1231 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 149 702 IPR027256 GO:0006812|GO:0016021|GO:0019829
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02172 Csa-Chr1:18849770 Csa02g01427 Csa-Chr2:13698624 4.82E-67 dispersed
Csa02g02791 Csa-Chr2:24267123 Csa01g02172 Csa-Chr1:18849770 1.69E-60 transposed
Csa04g00944 Csa-Chr4:7062141 Csa01g02172 Csa-Chr1:18849770 8.20E-66 transposed
Csa04g01102 Csa-Chr4:9299082 Csa01g02172 Csa-Chr1:18849770 1.74E-68 transposed
Csa04g02581 Csa-Chr4:25345754 Csa01g02172 Csa-Chr1:18849770 2.43E-61 transposed
Csa05g00291 Csa-Chr5:1823864 Csa01g02172 Csa-Chr1:18849770 5.76E-71 transposed
Csa06g03896 Csa-Chr6:30800528 Csa01g02172 Csa-Chr1:18849770 7.25E-83 transposed
Csa01g02172 Csa-Chr1:18849770 Csa02g00655 Csa-Chr2:4969020 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02172 K01534 - csv:101211188 2324.28