Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g02172 | ATGGCGGCGACGGAGGCAGAGGGAAATAAGGGTGGTGGGTTGAAGAAAAGTTACTTTGATGTCTTGGGGATTTGTTGTTCTTCAGAAATTCCGGTGATTGAGAATATATTGAAGGATATTGAAGGGATTAAAGAGATTAGAGTGATTGTTGCAACAAGAACTGTCATTGTTCTTCATGATGATCTTCTCGTTTCCCAAGCACAAATTGTTAAAGCCCTGAACCAAGCAAGATTTGAAGCGAACGTTAGAGCGTACGGAGATCAGAAAGATCACCGGAAAAAATGGCCGAGCCCGTATGCGGTGGCCAGTGGGCTGTTGCTGCTCTTGTCGTTACTCAAATATGTGAATCCTATTTTTCGATGGGTCGCTTTAGCCGCCGTCGCCGCCGGAATCTTGCCCATTGTCCTCAAAAGCTTCGCCGCCGTTCGCCATCTCAGAATCGACATCAATATTCTTGCTTTAATTGCAGTAATCGGAACAATTGTGCTGAAGGATTACTTGGAAGCAGCCACCATCGTCTTCCTCTTCACCATCGCCGAATGGCTCGAGTCCAGAGCCGCCCACAAGGCCAACGCCGTCATGTCATCCCTTCTAAGTATTGCTCCTCAGAAAGCGGTTCTAGCCGACACTGGCGAAGTTGTCGGCGCCGACGAGGTCAAATTAGGGACTCTTCTGGCTGTGAAGGCCGGTGAGGACATACCCATTGATGGAATCGTTGTGGAAGGAAAATGTGAAGTGGATGAGAAAACACTTACAGGCGAATCTTTTCCTGTTCCCAAACAAAAGAATTCCACTGTTTGGGCTGGTACCATTAATCTAAATGGCTATGTTACTGTGAAGACTACTGCCCTTGCTGAAGACTGTGTGGTGGCCAAAATGGCTAAGCTGGTTGAGGAGGCCCAGAACAATAAATCTAGAACTCAAAGGTTCATTGACAAATGTGCCAAATTCTATACTCCAGCTGTTATAATCATATCAACTTGCATAGTAGTGATTCCACTTGCTTTGAGACTTCCCAATCGCAGCCATTGGTTTCACTTGGCCTTGGTTGTGTTAGTAAGTGCGTGTCCCTGTGCACTCATCCTTTCCACTCCTGTTGCGTCTTTCTGTGCACTTACTAAGGCAGCAACATCTGGTCTTTTAATCAAAGGAGGTGACTACCTTGAAACACTTGGCAAAATTAAGATCATGGCCTTTGATAAAACTGGGACAATAACAAGAGGTGAATTTATGGTGACTGAATTTCAAGTTCTTGATAAGGACAATATAAGCTTAGACACATTGCTGTACTGGGTGTCGAGCATCGAGAGCAAGTCCAGTCATCCAATGGCAGCTGCACTTGTTGACCATGGAAGATCACTATCCATTGATCCCAAACCTGAAAATGTGGACGACTTTCAAAATTTTCCTGGAGAAGGTGTTCATGGGAGAATTGATGGGAAAGACATCTATATTGGAAATCGAAAAATTGCTACAAGAGCCAACTGCGCAACAGTCCCAGAGATCAAAGATGAAGCAAAGGATGGGAGGACTGTTGGATACATATTCTGTGGAACTATTGCCGCTGGAGTCTTTAGTCTGTCTGATTCGTGTAGAACAGGGGCTAAAGAGGCCATGGATGAGCTTAGATCTCTCGGTATAAAAACAGCCATGCTCACTGGAGACAGTTCTGCAGCAGCCTTGCAAGCACAAAAAGAATTGGGAAAGGCTTTACAAGCAGTTCATGCCGAACTTCTACCTCAAGACAAGACAAGGCTTATCAATGACTTCAAAAAGGAGGGGCCAACAGCCATGATTGGAGATGGTCTAAACGATGCCCCTGCCTTGGCCACAGCTGATATTGGCATATCAATGGGAATCTCAGGTTCAGCCCTCGCAATAGAAACTGGAGATGTAATTTTAATGACTAATGATATCAGGAAAGTTCCAAAAGCCATTCGACTTGCAAGAAGAGCTAATAATAAAGTAATTGAAAATGTGATTCTATCCGTTGTTCCTAGGATTGCTATACTTGGCCTGGCATTTGGTGGTCATCCACTTGTTTGGGCAGCAGTTCTTGCTGATGTTGGTGCCTGTGTGCTAGTTATCCTCAACAGTATGCTCCTGCTGCGAGGAACAGACGGACACAAAGGGAAGAAAGCTGGCAAGTTTTCTGCTACTCATGGTTCCTCCAAACATAAATGTTGTCACGTTAGCAGCCATTCAGATGAATGTAGTGGTCACACCCATGATCATGGTTGCAACCATCGCAGTTCTCACTCTTCTAGTCATAGTCACCATCACCATCACCATCACCATGAGCACGAGGACTGTGGCTCTCTCAAGAATACTCATGATGGTTGTTTACAAAAGAATCATCCCTCCATGTGTGATTCCAAGTTGAAAAATTCAAGTTCATGCAAGAAAAGTAAACTCATGAACCCAAGTTCTAAGATAGATGGTTCTACCGGGTGTGTAAAACTCTGTGAACATGATCACACCCATGATCACGGGTGCAGTGACGGCTCGGACTCTTCTAGTCATAGTCATCATCAACATCACCACCACCATCATCATGAGCACGAGGATTGCCACTCGCTCGAGAAAACTCATGATGTTTGTTTACCTCAGAATCATGCTTCCAAGTGTGATTCCAGGTCGAAAAATTTGAGTTCGTTCAACGAAGGTAAACACATAGACTCATGTTCTAAGGTAGATGGTTCTACCGGTAGTGTACAACTCTGTGAACATGATCACATGCATGATCATGGGTGCAACACCGACAGTACTGACTCTTCTAGTCATAGTCACCACCACCATTATGAGCACGAGGACTGTGGTTCTCTCAAGAAAACTCATGATGGTTGCGTACTTCAGAATTGTGCTTCAAAGTGTGATTCCGGGATGAAATCTTCAAGTTCATGCAAGAAAAGTAAACTCGTGGATTCAAGTTCTAAGGTAGATGATTCTGCAAGCAGTCTAAAACCCTGTGAACATGGACATATCTGTAACGATCAGCCTGCTGAACACGACCACCATCCTTATTCTTCATGCACTGATCATCATGCCAAGGATGAACTCTGCTCTCCAGAGAATACACAAGAGTTTTGCTCGTTTCAGAAGTGTGCATCAAATTCATGTGAGAAAATCAAGTGCACAAGCTCACCCGCAAGCCACGATGGATCTGCTGTGATTGTTGAGCTCGATGAAAGTGGATGTTGTACTCATAATACCCAATCTGCTCAACATGATCATGACATCCAAAGTCCCAAATGTGATTTTGATGATAGCCACTCACCCAGTCTTGAACATCATATTAGTAATGGTTGTTGCTCTCAAAAGAATACTCACAAGGATTTTTTATCTCATCCAATGCGTGATTCTGAAACCTGCAAGGAAGGCGTTCATCTTCATTGTAAAGCATCAAATGAAGATAATGGAGCAATCAACAATACTGTAAATATCAAGCTTGAAGCAGACCATTCGAACTCTAAACGTGGCAACACTAGTAATAAGCCAATGGAAAACAGAGAGACAAACAACTGTAAAAGCTGCAGAAGGGGAAGTTCACAATTCAAAATTGGAAAATCTTGTGCAGGCTTGAATAAGAGAGAAGTGGGTGGGTGTTGTAAGAGCTACATGAAGGAGTGTTGTAGGAAGCATGGCGATATCAGAATGGCAGTTCGTGGAGGCTTAAACGAAATCATCATAGAATAG | 3696 | 43.89 | MAATEAEGNKGGGLKKSYFDVLGICCSSEIPVIENILKDIEGIKEIRVIVATRTVIVLHDDLLVSQAQIVKALNQARFEANVRAYGDQKDHRKKWPSPYAVASGLLLLLSLLKYVNPIFRWVALAAVAAGILPIVLKSFAAVRHLRIDINILALIAVIGTIVLKDYLEAATIVFLFTIAEWLESRAAHKANAVMSSLLSIAPQKAVLADTGEVVGADEVKLGTLLAVKAGEDIPIDGIVVEGKCEVDEKTLTGESFPVPKQKNSTVWAGTINLNGYVTVKTTALAEDCVVAKMAKLVEEAQNNKSRTQRFIDKCAKFYTPAVIIISTCIVVIPLALRLPNRSHWFHLALVVLVSACPCALILSTPVASFCALTKAATSGLLIKGGDYLETLGKIKIMAFDKTGTITRGEFMVTEFQVLDKDNISLDTLLYWVSSIESKSSHPMAAALVDHGRSLSIDPKPENVDDFQNFPGEGVHGRIDGKDIYIGNRKIATRANCATVPEIKDEAKDGRTVGYIFCGTIAAGVFSLSDSCRTGAKEAMDELRSLGIKTAMLTGDSSAAALQAQKELGKALQAVHAELLPQDKTRLINDFKKEGPTAMIGDGLNDAPALATADIGISMGISGSALAIETGDVILMTNDIRKVPKAIRLARRANNKVIENVILSVVPRIAILGLAFGGHPLVWAAVLADVGACVLVILNSMLLLRGTDGHKGKKAGKFSATHGSSKHKCCHVSSHSDECSGHTHDHGCNHRSSHSSSHSHHHHHHHHEHEDCGSLKNTHDGCLQKNHPSMCDSKLKNSSSCKKSKLMNPSSKIDGSTGCVKLCEHDHTHDHGCSDGSDSSSHSHHQHHHHHHHEHEDCHSLEKTHDVCLPQNHASKCDSRSKNLSSFNEGKHIDSCSKVDGSTGSVQLCEHDHMHDHGCNTDSTDSSSHSHHHHYEHEDCGSLKKTHDGCVLQNCASKCDSGMKSSSSCKKSKLVDSSSKVDDSASSLKPCEHGHICNDQPAEHDHHPYSSCTDHHAKDELCSPENTQEFCSFQKCASNSCEKIKCTSSPASHDGSAVIVELDESGCCTHNTQSAQHDHDIQSPKCDFDDSHSPSLEHHISNGCCSQKNTHKDFLSHPMRDSETCKEGVHLHCKASNEDNGAINNTVNIKLEADHSNSKRGNTSNKPMENRETNNCKSCRRGSSQFKIGKSCAGLNKREVGGCCKSYMKECCRKHGDIRMAVRGGLNEIIIE* | 1232 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 18849770 | 18856924 | + | CsaV3_1G031800.1 | Csa01g02172 | 516669 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g02172 | 1231 | SUPERFAMILY | HAD-like | 398 | 700 | IPR036412 | - | |
Csa01g02172 | 1231 | SUPERFAMILY | Calcium ATPase, transduction domain A | 212 | 297 | IPR008250 | - | |
Csa01g02172 | 1231 | Gene3D | - | 409 | 531 | IPR023299 | GO:0000166 | |
Csa01g02172 | 1231 | PANTHER | CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED | 4 | 721 | - | - | |
Csa01g02172 | 1231 | SFLD | C1.7: P-type atpase like | 381 | 651 | - | - | |
Csa01g02172 | 1231 | SFLD | p-type atpase | 381 | 651 | IPR044492 | - | |
Csa01g02172 | 1231 | Pfam | E1-E2 ATPase | 208 | 376 | - | - | |
Csa01g02172 | 1231 | CDD | P-type_ATPase_HM | 99 | 701 | - | - | |
Csa01g02172 | 1231 | Gene3D | - | 187 | 301 | - | - | |
Csa01g02172 | 1231 | MobiDBLite | consensus disorder prediction | 790 | 809 | - | - | |
Csa01g02172 | 1231 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 149 | 392 | IPR023298 | - | |
Csa01g02172 | 1231 | MobiDBLite | consensus disorder prediction | 740 | 771 | - | - | |
Csa01g02172 | 1231 | ProSitePatterns | Hypothetical cof family signature 2. | 599 | 621 | - | - | |
Csa01g02172 | 1231 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 400 | 406 | IPR018303 | - | |
Csa01g02172 | 1231 | TIGRFAM | ATPase-IB2_Cd: cadmium-translocating P-type ATPase | 149 | 492 | - | - | |
Csa01g02172 | 1231 | CDD | HMA | 19 | 80 | IPR006121 | GO:0046872 | |
Csa01g02172 | 1231 | Gene3D | - | 389 | 650 | IPR023214 | - | |
Csa01g02172 | 1231 | SUPERFAMILY | HMA, heavy metal-associated domain | 12 | 86 | IPR036163 | GO:0046872 | |
Csa01g02172 | 1231 | MobiDBLite | consensus disorder prediction | 833 | 855 | - | - | |
Csa01g02172 | 1231 | MobiDBLite | consensus disorder prediction | 1152 | 1175 | - | - | |
Csa01g02172 | 1231 | MobiDBLite | consensus disorder prediction | 752 | 766 | - | - | |
Csa01g02172 | 1231 | Gene3D | - | 13 | 84 | - | - | |
Csa01g02172 | 1231 | Pfam | haloacid dehalogenase-like hydrolase | 394 | 613 | - | - | |
Csa01g02172 | 1231 | ProSitePatterns | Anaphylatoxin domain signature. | 1177 | 1211 | IPR000020 | GO:0005576 | |
Csa01g02172 | 1231 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 172 | 677 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Csa01g02172 | 1231 | ProSiteProfiles | Heavy-metal-associated domain profile. | 16 | 82 | IPR006121 | GO:0046872 | |
Csa01g02172 | 1231 | PANTHER | CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED | 4 | 721 | - | - | |
Csa01g02172 | 1231 | MobiDBLite | consensus disorder prediction | 1159 | 1175 | - | - | |
Csa01g02172 | 1231 | PRINTS | P-type cation-transporting ATPase superfamily signature | 247 | 261 | - | - | |
Csa01g02172 | 1231 | PRINTS | P-type cation-transporting ATPase superfamily signature | 398 | 412 | - | - | |
Csa01g02172 | 1231 | PRINTS | P-type cation-transporting ATPase superfamily signature | 545 | 555 | - | - | |
Csa01g02172 | 1231 | PRINTS | P-type cation-transporting ATPase superfamily signature | 599 | 618 | - | - | |
Csa01g02172 | 1231 | PRINTS | P-type cation-transporting ATPase superfamily signature | 623 | 635 | - | - | |
Csa01g02172 | 1231 | TIGRFAM | ATPase-IB_hvy: heavy metal translocating P-type ATPase | 149 | 702 | IPR027256 | GO:0006812|GO:0016021|GO:0019829 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02172 | Csa-Chr1:18849770 | Csa02g01427 | Csa-Chr2:13698624 | 4.82E-67 | dispersed | |
Csa02g02791 | Csa-Chr2:24267123 | Csa01g02172 | Csa-Chr1:18849770 | 1.69E-60 | transposed | |
Csa04g00944 | Csa-Chr4:7062141 | Csa01g02172 | Csa-Chr1:18849770 | 8.20E-66 | transposed | |
Csa04g01102 | Csa-Chr4:9299082 | Csa01g02172 | Csa-Chr1:18849770 | 1.74E-68 | transposed | |
Csa04g02581 | Csa-Chr4:25345754 | Csa01g02172 | Csa-Chr1:18849770 | 2.43E-61 | transposed | |
Csa05g00291 | Csa-Chr5:1823864 | Csa01g02172 | Csa-Chr1:18849770 | 5.76E-71 | transposed | |
Csa06g03896 | Csa-Chr6:30800528 | Csa01g02172 | Csa-Chr1:18849770 | 7.25E-83 | transposed | |
Csa01g02172 | Csa-Chr1:18849770 | Csa02g00655 | Csa-Chr2:4969020 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g02172 | K01534 | - | csv:101211188 | 2324.28 |