Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02179 ATGAGAGGTGCTGGAAAGAGATTGATGGAGGAATCTGAAAAATGTTCTCACTCCAAGCTGGAATCTGGATCAGAGTTGATCTTTTCTCTGAAGTTGACAAGGTGTAGCAAAATATCCCATTCCAAGCAGAAAAAATCAAGAATGAAATCACATTCACAGGCGATTTGTTCAACATTCAAGAGGAGACCTCTCCCTAAATCTTTGAGTAAGGGGAATAAAAATGTGACAATTAGACAACTTGCTGGTAAAAAATTTTTGCTAAAAAAACTTGATACAAAACCGTCCAAGGAGTTACTCTTGTCAAAGCTTCAAGGTGAAAAATCTCTGTCATCAACTAATACGAAAGGGAATGCAGAAAAGGTTGAGCCGGTGGTCAAGATAAACCAACAAAGGAAGAGGAAGAAGAACAAAGGAAAAAAGGAAAAAGTGGAGTTAGATGAAGCTTCTCGCCTACAGAGGAGAACAAGATACCTTATCATTAAAATGAAGCTAGAGCAAAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGCCAGAGTCGAGAAAAAATTAGGCCAGAAAAGGAACTTCAGAGAGCCATGAAGCAGATATTAAAGTGCAAACTTGGAATCCGTGATGCTATTCGCCAGCTGGATTTGCTTGGTTCAGTAGGATGCATTGAAGACTCTGTTATTGGTCCTGATGGATCTGTCTACCACGAGCATATATTCTGTGCAAAATGTAAACTACGTGAAGCTTTCCCAGACAATGACATTATACTTTGTGATGGGACATGCAACTGTGCTTTTCACCAAAAATGTCTGGATCCACCATTAGACACGAAAAGTATTCCTCCAGGAGATCAGGGTTGGTTTTGCAAATTTTGTGAGTGCAAGATGGAAATATTGGAAGGAATGAATGCACATCTTGGTACTCGATTCTCATTGAACATTGGTTGGGAGGACATTTTCAAAGAAGAAGCTGCTTTCCCAGATGGTGGGAATGCGTTGCTTAATCATGAGGAAGATTGGCCCTCAGATGATTCGGAAGATGATGACTATGATCCAGATAAGAAAGAGAATTGCCATGACAACGCAAGTGAGGAAGAAAATGACAAGGAGGTTTTGGAGGAGTCCAGTAGTTCAACCAGCTTGAGTTGGTCTTTAGATGGCGAGGATTTAGTTTCCGGAAACGGTATTGGATGTGAAGATCACTTTGGTGCTGGTACCAGCATAGTTTCTGATGGATCCAATGAAGAGGGCATCACATGCGGCCGACGGCAGCGACATGCTGTTGATTATAAAAAGTTATATGATGAAATGTTTGGAAAGGATACTCCAGCACACGAACAAGAAGTGAGTGAAGATGAAGACTGGGGACCTGCAAAAAGAAGACGGAGAGAAAAGGAATGTGATGCTGCAAGTACTCTCATGTCCCTCTGTGAAAGCGAAAAAAAGAGTCAAGACATTGACATGGAAGCAGAGAAAAAACTTCTCAATTCTCACGGTAGATCATTTTTCAGAATCCCACGTCATGCAGTTGAGAAACTTCGCAAAGTGTTTGCTGATAATGAACTTCCCTCTAGAGACGTCAAGGAAAACCTTTCAAAAGAATTGGGTCTTGATGCTGAAAAGGTCAGCAAATGGTTCAAGAATGCACGATATTCTGCACTAAGAACTAGAAAGGCGGAGGGAGCAACACAACCCCATAGTTCTCATAAGACTTCCAATGAGCTCAGATTAGCAGATTCAAAGGAAATGTCTAAGAATCTTCTTTCATTAGAGAACGCACCAATTAAAGAACTGCAGCTGAAGTTGCACGGAAGTCATAGCAAGAAAAAGCAGCACAGAAAATCATCACATGTATCTTCCAACTATAACAAGGATGCTTTTGATTTTGGTGATGATATAAGCTTGAAGAATCTCCTAAAGAAAAGAAAAACAAAGGTAAAGAAGAGGGTAAACTTTGTAGCGAGAGGTGAAGGTCAAGCAGCAGAATTGGAGATGGAGAGATTGTGTAAAATTAAGGGTAGATTAGAGACAATGAAGCAGAAATTACTTAGACTATCGAAAAGGAAGGATGATGGGATTTTAGATAGGTCACACATGATTGAACAGTCTATTGTATATGTTCCTGTGGCAGTGTTAAAGGAAAAGGTTTGA 2145 40.28 MRGAGKRLMEESEKCSHSKLESGSELIFSLKLTRCSKISHSKQKKSRMKSHSQAICSTFKRRPLPKSLSKGNKNVTIRQLAGKKFLLKKLDTKPSKELLLSKLQGEKSLSSTNTKGNAEKVEPVVKINQQRKRKKNKGKKEKVELDEASRLQRRTRYLIIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAMKQILKCKLGIRDAIRQLDLLGSVGCIEDSVIGPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLDTKSIPPGDQGWFCKFCECKMEILEGMNAHLGTRFSLNIGWEDIFKEEAAFPDGGNALLNHEEDWPSDDSEDDDYDPDKKENCHDNASEEENDKEVLEESSSSTSLSWSLDGEDLVSGNGIGCEDHFGAGTSIVSDGSNEEGITCGRRQRHAVDYKKLYDEMFGKDTPAHEQEVSEDEDWGPAKRRRREKECDAASTLMSLCESEKKSQDIDMEAEKKLLNSHGRSFFRIPRHAVEKLRKVFADNELPSRDVKENLSKELGLDAEKVSKWFKNARYSALRTRKAEGATQPHSSHKTSNELRLADSKEMSKNLLSLENAPIKELQLKLHGSHSKKKQHRKSSHVSSNYNKDAFDFGDDISLKNLLKKRKTKVKKRVNFVARGEGQAAELEMERLCKIKGRLETMKQKLLRLSKRKDDGILDRSHMIEQSIVYVPVAVLKEKV* 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18916530 18925133 + CsaV3_1G031870.1 Csa01g02179 516676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02179 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 287 IPR013083 -
Csa01g02179 714 MobiDBLite consensus disorder prediction 554 576 - -
Csa01g02179 714 MobiDBLite consensus disorder prediction 329 384 - -
Csa01g02179 714 CDD PHD_PRHA_like 238 290 IPR045876 -
Csa01g02179 714 MobiDBLite consensus disorder prediction 601 615 - -
Csa01g02179 714 ProSitePatterns Zinc finger PHD-type signature. 239 290 IPR019786 -
Csa01g02179 714 SMART PHD_3 238 291 IPR001965 -
Csa01g02179 714 Coils Coil 353 373 - -
Csa01g02179 714 MobiDBLite consensus disorder prediction 1 21 - -
Csa01g02179 714 SMART HOX_1 496 558 IPR001356 GO:0003677
Csa01g02179 714 PANTHER POLYCOMB PROTEIN PCL 1 688 - -
Csa01g02179 714 CDD homeodomain 502 555 IPR001356 GO:0003677
Csa01g02179 714 MobiDBLite consensus disorder prediction 350 364 - -
Csa01g02179 714 Gene3D - 498 561 - -
Csa01g02179 714 MobiDBLite consensus disorder prediction 1 20 - -
Csa01g02179 714 ProSiteProfiles 'Homeobox' domain profile. 494 554 IPR001356 GO:0003677
Csa01g02179 714 MobiDBLite consensus disorder prediction 600 619 - -
Csa01g02179 714 SUPERFAMILY FYVE/PHD zinc finger 229 296 IPR011011 -
Csa01g02179 714 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 1 688 - -
Csa01g02179 714 MobiDBLite consensus disorder prediction 439 461 - -
Csa01g02179 714 Pfam Homeodomain 505 549 IPR001356 GO:0003677
Csa01g02179 714 MobiDBLite consensus disorder prediction 107 146 - -
Csa01g02179 714 SUPERFAMILY Homeodomain-like 498 560 IPR009057 -
Csa01g02179 714 Pfam PHD-finger 238 293 IPR019787 -
Csa01g02179 714 ProSiteProfiles Zinc finger PHD-type profile. 236 293 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02179 Csa-Chr1:18916530 Csa03g01810 Csa-Chr3:13859402 1.11E-11 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30760 PF00628 PHD 1.30E-09 CL0390 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02179 - - csv:101212164 1350.88