Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa01g02184 | ATGGATATTATCGGAGACGACTACTTGAATCCCTTCGGGAATGAAATCTTCATAGGAGAAGAGCTCGACAGTTGGGGATTGGAAGAGCCGTTTTCGGGTGATTATGATTCGAGTTCGCCGGATGGATCGGCGGCTTCGAAGAACGTAGCATCGGAAAGGAATAGAAGGAGGAAGCTGAACGAGAGGCTTTTTGCACTTCGATCGGTTGTTCCGAATATAAGTAAGATGGATAAGGCTTCGATTATAAAAGATGCAATCGATTACATCCATGATTTGCATGACCAAGAGAGGAGGATTCAAGCTGAAATTTACGAGCTCGAATCAGGAAAGTTGAAGAAGATAACAGGGTATGAATTTGACCAGGATCAACTTCCCTTACTGCTAAGATCAAAGAGGAAGAAAACTGAGCAATACTTCAGTTATGATTCTCCTGTTTCAAGAATTTCCCCAATTGAAGTTCTGGATCTTAGTGTAACATACATGGGAGATAGAACAATAGTAGTGAGCATGACCTGCTGCAAAAGAGCAGATTCAATGGTTAAACTCTGTGAAGTTTTTGAGTCACTCAACCTCAAGATCATCACTGCCAATATTACTGCTGTTTCTGGAAGGCTTCTGAAAACTGTCTTCATTGAGGCTGAGCAAGAGGAGAGAGATTGCTTGAAGATTAAAATAGAAACAGCCATTGCAGGTCTTAATGATCCACATAGCCCCATGAGTATCTGA | 726 | 41.74 | MDIIGDDYLNPFGNEIFIGEELDSWGLEEPFSGDYDSSSPDGSAASKNVASERNRRRKLNERLFALRSVVPNISKMDKASIIKDAIDYIHDLHDQERRIQAEIYELESGKLKKITGYEFDQDQLPLLLRSKRKKTEQYFSYDSPVSRISPIEVLDLSVTYMGDRTIVVSMTCCKRADSMVKLCEVFESLNLKIITANITAVSGRLLKTVFIEAEQEERDCLKIKIETAIAGLNDPHSPMSI* | 242 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 18957508 | 18969046 | - | CsaV3_1G031920.1 | Csa01g02184 | 516681 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa01g02184 | 241 | Gene3D | - | 38 | 109 | IPR036638 | GO:0046983 | |
| Csa01g02184 | 241 | PANTHER | TRANSCRIPTION FACTOR BHLH35 | 15 | 235 | - | - | |
| Csa01g02184 | 241 | Pfam | Helix-loop-helix DNA-binding domain | 49 | 92 | IPR011598 | GO:0046983 | |
| Csa01g02184 | 241 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 41 | 107 | IPR036638 | GO:0046983 | |
| Csa01g02184 | 241 | MobiDBLite | consensus disorder prediction | 29 | 54 | - | - | |
| Csa01g02184 | 241 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 15 | 235 | - | - | |
| Csa01g02184 | 241 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 43 | 92 | IPR011598 | GO:0046983 | |
| Csa01g02184 | 241 | SMART | finulus | 49 | 98 | IPR011598 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa01g02184 | Csa-Chr1:18957508 | Csa06g01239 | Csa-Chr6:10430376 | 1.37E-19 | dispersed | |
| Csa06g03121 | Csa-Chr6:26672336 | Csa01g02184 | Csa-Chr1:18957508 | 3.64E-08 | dispersed | |
| Csa05g01831 | Csa-Chr5:21650877 | Csa01g02184 | Csa-Chr1:18957508 | 6.36E-19 | transposed | |
| Csa05g02335 | Csa-Chr5:25725825 | Csa01g02184 | Csa-Chr1:18957508 | 7.17E-24 | transposed | |
| Csa01g02184 | Csa-Chr1:18957508 | Csa02g00670 | Csa-Chr2:5179234 | 3.24E-75 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 30761 | PF00010 | HLH | 1.20E-11 | No_clan | Csa | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa01g02184 | - | - | csv:101203659 | 455.677 |