Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02192 ATGGCCGTCGATCTAGCAGCTTTTCCGGCCTTCTTCGACGATCAAACAGCCATTGAAGAAGCCGCCACTGCGGGTTTACAAAGCATGAATCATCTAATCCATCTCTTATCCAAACAACACCACCACCACCACCACCACCACTCTGAATCTCCTAATAACATCGATCTCAATTCTTCTCTTCTCACCGATTTCACCGTCTCCAAATTTAAACGGTTGATTTCCCTCTTAAACCGAACCGGCCACGCTCGTTTCCGCCGTGGACCTTCCGATTCTCCAAATCCCGTTCTGAATTCCCTCGATCCGCCTCAGAAAACCCATTTCTCTAAACTTAATTTCTCCCCTGTTTCGAAAGTCCCTGAGTCTAGAGATTCCACTACTACCTCTTCCTTTGTGTCTACGGTCACCGGCGACGGTAGTGTTTCTAACGGTAAGCTTGATCTGTCTGTCTATGCAACGCCGCCGGCCAACGCCGGTAAACCGCCGTTGGCGATGAAGAGCAAGTGTCACGATGTATCTGGATTTGGTTGTAAGGTTCCTAATTCGAAGCTCTGTCACTGTGCCAAGCGAAGGAAATCTGGAATGAAGAAAACGGTAAAAGTCCCGGCGATCAGTTCTAAGATCGCTGATATACCCTCCGATGAATACTCATGGAGAAAGTACGGCCAAAAACCCATCAAAGGCTCACCTTATCCTAGAGGGTATTACAGATGTAGCAGCGTGAAAGGATGTCCGGCGAGAAAAAAGGTAGAAAGAGCTCGTGACGATCCGGCGATGCTTCTCGTAACATACGAGGGGGATCACCGTCACCCGCACCCTACGGTCACCGACGGCGTTTCCCAAAAGAGTTGA 849 49.23 MAVDLAAFPAFFDDQTAIEEAATAGLQSMNHLIHLLSKQHHHHHHHHSESPNNIDLNSSLLTDFTVSKFKRLISLLNRTGHARFRRGPSDSPNPVLNSLDPPQKTHFSKLNFSPVSKVPESRDSTTTSSFVSTVTGDGSVSNGKLDLSVYATPPANAGKPPLAMKSKCHDVSGFGCKVPNSKLCHCAKRRKSGMKKTVKVPAISSKIADIPSDEYSWRKYGQKPIKGSPYPRGYYRCSSVKGCPARKKVERARDDPAMLLVTYEGDHRHPHPTVTDGVSQKS* 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19017073 19019018 - CsaV3_1G032000.1 Csa01g02192 516689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02192 282 SUPERFAMILY WRKY DNA-binding domain 209 272 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa01g02192 282 Pfam Plant zinc cluster domain 165 209 IPR018872 -
Csa01g02192 282 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 12 273 IPR044810 GO:0003700
Csa01g02192 282 Gene3D WRKY domain 196 273 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa01g02192 282 SMART WRKY_cls 211 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa01g02192 282 MobiDBLite consensus disorder prediction 91 134 - -
Csa01g02192 282 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 12 273 - -
Csa01g02192 282 MobiDBLite consensus disorder prediction 82 134 - -
Csa01g02192 282 Pfam WRKY DNA -binding domain 213 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa01g02192 282 ProSiteProfiles WRKY domain profile. 206 272 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02192 Csa-Chr1:19017073 Csa03g04408 Csa-Chr3:38433423 4.04E-66 dispersed
Csa07g00476 Csa-Chr7:3456072 Csa01g02192 Csa-Chr1:19017073 2.97E-28 dispersed
Csa01g02192 Csa-Chr1:19017073 Csa06g02959 Csa-Chr6:25618485 1.65E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30762 PF03106 WRKY 4.50E-26 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02192 - - csv:101204382 539.265