Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02197 ATGGCGGCGACGGTGAGTATGAGGAAGATTTTGACGGCATCAGCAGCTATGGTCTGCGCCGTAGCCATAGCGTCTCTATGCGGGGCCTCATCTTCCCCAGAATCATTCATCAAGAACACCATCGCCTCTCATCAGATCGTCATCTTCTCCAAGTCTTATTGCCCGTATTGTAGAAGGGCAAAAGCTGTTTTCAAGGAATTGCACAAAGTTCCTCATGTTGTTGAGCTGGATCAAAGAGATGATGGCAGTTCCCTTCAAAATGCTCTTAGCGTACTCTTCGGAAGGCGGACTGTACCTCAAGTGTTCATAGATGGAAAACACATCGGTGGATCAGATGATACTCTCGAAGCATATGAGAGTGGGGAGTTGAGGAAACTTCTAGGCATCAAGGAAGACCACAAAGCTGATCTTTGA 414 47.34 MAATVSMRKILTASAAMVCAVAIASLCGASSSPESFIKNTIASHQIVIFSKSYCPYCRRAKAVFKELHKVPHVVELDQRDDGSSLQNALSVLFGRRTVPQVFIDGKHIGGSDDTLEAYESGELRKLLGIKEDHKADL* 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19059785 19062116 + CsaV3_1G032050.1 Csa01g02197 516694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02197 137 PANTHER GLUTAREDOXIN 2 15 124 - -
Csa01g02197 137 ProSiteProfiles Glutaredoxin domain profile. 34 134 - -
Csa01g02197 137 SUPERFAMILY Thioredoxin-like 35 127 IPR036249 -
Csa01g02197 137 TIGRFAM GRX_euk: glutaredoxin 46 127 IPR011899 -
Csa01g02197 137 PANTHER BNAA02G04900D PROTEIN 15 124 - -
Csa01g02197 137 ProSitePatterns Glutaredoxin active site. 48 63 IPR011767 -
Csa01g02197 137 Gene3D Glutaredoxin 31 136 - -
Csa01g02197 137 CDD GRX_GRXh_1_2_like 46 126 - -
Csa01g02197 137 PRINTS Glutaredoxin signature 46 64 IPR014025 -
Csa01g02197 137 PRINTS Glutaredoxin signature 91 104 IPR014025 -
Csa01g02197 137 PRINTS Glutaredoxin signature 105 118 IPR014025 -
Csa01g02197 137 Pfam Glutaredoxin 46 108 IPR002109 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02197 Csa02g00662 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02197 Csa-Chr1:19059785 Csa06g03296 Csa-Chr6:27640533 2.16E-39 dispersed
Csa01g02197 Csa-Chr1:19059785 Csa01g02198 Csa-Chr1:19062376 1.36E-60 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02197 K03676 - csv:101205358 266.159