Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02201 ATGGAAGATCATCATGAAGATGAAATTTGCAATATCAGTTGGCTTAGCCTTGGTTTGGGATTTGGTGATCAATATGTCCCAAAGAAGATTCAAAAAAATCAACAGCAACAACAACAACTCTCTTTCACTCTCATTCCTAAAGAAGAATTGGAAATTACCAACAACAACAATATGGAAATTGATGATGATGAAGCTAATTCAAGTGAAGAAGATGATGATCATCATTTAATGAAGAGGATTAGAAGCAGTAATAATATTGTTAATTACGATCATCATCGTCAAGATTCTTCCTTTGGATCAATTAGAAGATTATCATCAGATCATTACATCAACAACAGCGATATTGTTAATACTACTAATCATAATTATAAAGGGATTAGTAGCAGTGGATCAGAATTAAGGGAGAGGAAAAAACTTAGGCTTTCTAAAGAACAATCCACTTTGTTGGAAGAAAGCTTCAAACTTCACACCACATTGAATCCGGCTCAGAAACAGGCACTTGCCCAACAATTAAACCTCAAAACTCGACAAGTGGAAGTTTGGTTTCAAAACAGACGTGCAAGGACGAAACTGAAACAAACAGAAGTGGACTGTGAGTTCTTGAAGAAATGCTGTGAAAGATTAAACGAAGAAAATCGAAGGTTGAAGAAAGAATTAAACGAATTAAGATCGCTTAAACTTGGAGCTTCACAATTGTATATTCAGCTGCCTAAGGCCGCGACGCTCACTATTTGCCCTTCATGCGACAAAATTACGAGGACGCCCGCCGTCGACGCCAATTCTCCGCCACAATAA 795 37.11 MEDHHEDEICNISWLSLGLGFGDQYVPKKIQKNQQQQQQLSFTLIPKEELEITNNNNMEIDDDEANSSEEDDDHHLMKRIRSSNNIVNYDHHRQDSSFGSIRRLSSDHYINNSDIVNTTNHNYKGISSSGSELRERKKLRLSKEQSTLLEESFKLHTTLNPAQKQALAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELNELRSLKLGASQLYIQLPKAATLTICPSCDKITRTPAVDANSPPQ* 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19087128 19089193 + CsaV3_1G032090.1 Csa01g02201 516698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02201 264 Coils Coil 191 228 - -
Csa01g02201 264 ProSitePatterns 'Homeobox' domain signature. 167 190 IPR017970 GO:0000981|GO:0006355
Csa01g02201 264 CDD homeodomain 136 193 IPR001356 GO:0003677
Csa01g02201 264 SMART halz 192 235 IPR003106 GO:0006355|GO:0043565
Csa01g02201 264 PANTHER - 12 252 - -
Csa01g02201 264 ProSiteProfiles 'Homeobox' domain profile. 132 192 IPR001356 GO:0003677
Csa01g02201 264 Pfam Homeobox associated leucine zipper 192 225 IPR003106 GO:0006355|GO:0043565
Csa01g02201 264 SMART HOX_1 134 196 IPR001356 GO:0003677
Csa01g02201 264 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 12 252 - -
Csa01g02201 264 SUPERFAMILY Homeodomain-like 119 193 IPR009057 -
Csa01g02201 264 Pfam Homeodomain 136 190 IPR001356 GO:0003677
Csa01g02201 264 Gene3D - 127 197 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02201 Csa-Chr1:19087128 Csa07g02054 Csa-Chr7:19866731 1.76E-55 dispersed
Csa01g02201 Csa-Chr1:19087128 Csa06g03058 Csa-Chr6:26295272 1.04E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30763 PF00046 Homeodomain 9.80E-16 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02201 K09338 - csv:101203427 493.426