Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02203 ATGCCTCGCCGAATACTTCAAGGAAGCTCTAAAGATCAGATGATGAAGAGCACTTCATCTCTGCTACAGTCTCCAGTTTTCTGCTTCTTCCTTGGGATGTTAGCTGTGCTGGTTATATTGCTGATTCTCTTATTGATCTTTAGGAAGTCTTTTAAACAAAATAAAGTGGTGAAGTTATTAAGACAAAGTGGAACAACTCAAGCATCAACAGATTTGTTAAGCGATAACCTGCATTCATTAAGTTACTTTGACTTTCACACACTGAAAAAGGCCACAAAGAATTTTAACCCAACGAATCTTCTTGGCCAAGGAGGATTTGGACCTGTCTATCTGGGTACACTCGAAGATGGAAGGTTAGTTGCAATTAAGAAACTTTCACTTAACAAATCCCAACAAGGAGAAGCAGAATTTCTATCAGAAGTCAGACTGATAACAAGCATCCAACACAAGAACCTTGTTCGCCTGCTTGGTTGTTGCTCCGATGGGCCTCAACGGCTACTCGTGTATGAATACATGGAGAACAGGAGTTTAGATCTCATAATATATGGTGGAAGTGAGCAAATCCTCAACTGGAACACCAGATTGAAGATTATCAGAGGCATTGCCAAAGGGTTGCAGTATCTTCATGAGGATTCCCATCTAAGAATAATTCACCGAGACATCAAAGCAAGCAATATTCTTCTTGATGACAAATTTCAACCGAAGATTGGTGATTTTGGGCTGGCCAGGTTCTTCCCTGATGATCAAGCTTACCTAAGCACTACATTTGCTGGAACTCTAGGTTACACAGCGCCAGAATATGCAATTAGGGGAGAACTGTCAGAGAAAGCAGATGTATACAGTTTTGGAGTTCTTGTGCTTGAAATCATCAGTGGCAGGAAAAACACAAATCTTTCTTTACCAACCGAAATGCAGTATCTTCCTGAATATGCATGGAAACTATATGAGAGGTCAACACTGATCGAACTTGTGGATCCAAAGATGAAGGAGGGTGGATTTTTGGAGAAGAATGTAGCACACGCAATTCAAGTTGCTTTGTTATGCCTTCAACCTCATGGCAATCTAAGACCTGCAATGTCTGAGATTGTTGCCATGCTAACATACAAGTTTGAAATTGTTCAAACGCCTTTGAAACCAGCTTTCTTAGAAAGAAGGCACAAAAGGAACAGAGATCTATCGTTGACTAATTATGCAGATATCACTCCATCTCCTTTACAATGA 1221 40.29 MPRRILQGSSKDQMMKSTSSLLQSPVFCFFLGMLAVLVILLILLLIFRKSFKQNKVVKLLRQSGTTQASTDLLSDNLHSLSYFDFHTLKKATKNFNPTNLLGQGGFGPVYLGTLEDGRLVAIKKLSLNKSQQGEAEFLSEVRLITSIQHKNLVRLLGCCSDGPQRLLVYEYMENRSLDLIIYGGSEQILNWNTRLKIIRGIAKGLQYLHEDSHLRIIHRDIKASNILLDDKFQPKIGDFGLARFFPDDQAYLSTTFAGTLGYTAPEYAIRGELSEKADVYSFGVLVLEIISGRKNTNLSLPTEMQYLPEYAWKLYERSTLIELVDPKMKEGGFLEKNVAHAIQVALLCLQPHGNLRPAMSEIVAMLTYKFEIVQTPLKPAFLERRHKRNRDLSLTNYADITPSPLQ* 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19103640 19105834 + CsaV3_1G032110.1 Csa01g02203 516700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02203 406 SMART serkin_6 95 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02203 406 ProSiteProfiles Protein kinase domain profile. 95 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02203 406 SUPERFAMILY Protein kinase-like (PK-like) 75 367 IPR011009 -
Csa01g02203 406 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 71 381 - -
Csa01g02203 406 Pfam Protein kinase domain 98 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02203 406 Gene3D Transferase(Phosphotransferase) domain 1 172 375 - -
Csa01g02203 406 CDD STKc_IRAK 101 367 - -
Csa01g02203 406 PANTHER RECEPTOR-LIKE KINASE 71 381 - -
Csa01g02203 406 Gene3D Phosphorylase Kinase; domain 1 65 171 - -
Csa01g02203 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02203 Csa-Chr1:19103640 Csa07g01190 Csa-Chr7:11679101 5.63E-105 dispersed
Csa01g02203 Csa-Chr1:19103640 Csa05g02318 Csa-Chr5:25639895 7.29E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77820 PF00069 Pkinase 3.90E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02203 - - csv:101203677 780.015