Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02205 ATGGGCACCCTTCCCAATTCCTTCTCCCTCTTCTCTCTCTTTTTCCTCTTCACCGCCGTCTCTCCGGCAGCCCCCACCACCTACCACCGACCTCTAAACCTTATCCTAACCCACCCTTTAAAGGAAACTGTTTTTCTTGCTTCTTCTTCTTCTTCTCCTCCCCCACCACCTCTGTTTATTCCCTCTGCTCCACCCCCCGAGGAGAAGCCGGTCTACTCTCCATTCCGGCCGAGCATGGCGGTGGTGGTGGGTGTCCTGACCACCACTTTCTCCATTACTTTCCTTCTTCTTTTATACGCCAAGCACTGCAAGCGTGGGAATGCGGCGGTGGTGGTCGGTTACTCGATGCGTCCCAATACGATGATGGGTGTTCCGAGCTTCTCGACGAGGAAGAACTCTGGCATCGACCAGACTGTTATCGAATCGTTACCGATTTTCCGATTTGGGTCGTTGAGTGGACAGAAGGAAGGCCTGGAATGCGCTGTTTGTTTGAACAGATTCGAGCCGACGGAGGTTCTGAGACTTCTTCCGAAATGCAAACACGCTTTCCATGTTGAATGTGTCGATACTTGGCTCGACGCTCACTCCACTTGCCCTCTCTGTCGCTACAGAGTCGACCCGGAGGACGTGTTATTAGTTGAAGACGTCAATATCTTTCTTCACGACCAACCACCTCCACCACCTCAGCCGCCGCCGCCGCCACCACGGGAATCGAATTCCAAGGATGTAGTGTTGAACTTAGAACAGGGGAGAAGAAGCGGCAAGGCTGGATCCGGGAGAGTCTCCGGTAGACACTCGTCAGTGGGCGAGAAGAGAACAGGGGAGTCCAGTTACCGTGATCCAGCATTGTTGAGACGGTCACTCGACAGCAAGAGAACCGAAACGGTGTCTGTTGGGTGCTTCGATCGGCACCGAAAAGACGGGTTACTTTTGCCGGAGGAGAAAACAAATCAAAATCAGAATCAGAACAGATTGGAGCACAGGATCATAGTGTCGCCGAAGGTGCCGGTGGTGGAGAGATGGAGCGATGTCCAAGGTTCGGATCTGTTGTATCTACGGTCAGAAATGATAATATCCGACAGCCGGAGATTTTCAGTAGCTTCATTACCAGTAGAATTAAAGAGACAGCGACGGATGGGGATGATGGGGAAGCATGCCGGAAAAGGGACCGGATGA 1176 52.55 MGTLPNSFSLFSLFFLFTAVSPAAPTTYHRPLNLILTHPLKETVFLASSSSSPPPPPLFIPSAPPPEEKPVYSPFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRGNAAVVVGYSMRPNTMMGVPSFSTRKNSGIDQTVIESLPIFRFGSLSGQKEGLECAVCLNRFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDVLLVEDVNIFLHDQPPPPPQPPPPPPRESNSKDVVLNLEQGRRSGKAGSGRVSGRHSSVGEKRTGESSYRDPALLRRSLDSKRTETVSVGCFDRHRKDGLLLPEEKTNQNQNQNRLEHRIIVSPKVPVVERWSDVQGSDLLYLRSEMIISDSRRFSVASLPVELKRQRRMGMMGKHAGKGTG* 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19113109 19114284 - CsaV3_1G032130.1 Csa01g02205 516702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02205 391 MobiDBLite consensus disorder prediction 265 281 - -
Csa01g02205 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 209 IPR013083 -
Csa01g02205 391 CDD RING-H2_EL5_like 159 202 - -
Csa01g02205 391 SUPERFAMILY RING/U-box 140 207 - -
Csa01g02205 391 ProSiteProfiles Zinc finger RING-type profile. 160 202 IPR001841 -
Csa01g02205 391 PANTHER RING-H2 FINGER PROTEIN ATL43 54 379 - -
Csa01g02205 391 SMART ring_2 160 201 IPR001841 -
Csa01g02205 391 MobiDBLite consensus disorder prediction 221 238 - -
Csa01g02205 391 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 54 379 - -
Csa01g02205 391 Pfam Ring finger domain 159 202 IPR001841 -
Csa01g02205 391 MobiDBLite consensus disorder prediction 219 281 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02205 Csa-Chr1:19113109 Csa06g01636 Csa-Chr6:14359942 2.66E-44 dispersed
Csa03g01045 Csa-Chr3:8391995 Csa01g02205 Csa-Chr1:19113109 8.47E-21 dispersed
Csa01g02205 Csa-Chr1:19113109 Csa01g01941 Csa-Chr1:16299480 1.09E-26 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02205 K19041 - csv:101203916 718.383