Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02210 ATGAAGAACATACCTCTCTACTTCCTCCGATCTCCGCCGTCTCTTCGCTTGCCGTTGCCACCCGCCAACCCCTTCTTGTCTCATCTCTCCTATTTCATAACCATCTCACTCTTTGGCTTTGGAGCTCTAAAGCTCACCCAAACTAGAACCTCCTCCTCCCCAAATGACCTCAACCTTTTCTTCACCTCTGTCTCTGCTGTTTCAGTATCGAGCATGTCTGTCGTTGAAATGGAAGTCTTTTCCAACTTCCAACTTCTCATCATCACCACCCTCATGTTCCTCGGCGGTGAAGTTTTCGTCTCCGCCGTCGCGTTCCAACTCTCTCGTCGGTTCAAATATTTGAACGAAGAAAACCATGTCGATTCGGTTCGGTCCATTGAGATGGAAGAAAATGGGACGTCGTCATCCACGATGGTCACCATTGATGAGTTGAGTATCTCAAGATCATGTTCGAAGGTTTTGGGTCATACGATAATTGGGTATCTTTTGGCGACGAATGTTCTTGGTTCTTTTCTCATTTTTATATACATTATTGTGGTACCTCATGCAAAGCAAGTGCTTGAAAGCAAAGGCATCAATTTCTTTACTTTTTCAATTTTTAGTACGGTTTCTACTTTTACCAACTGTGGGTTCATACCTACTAACGAAAATATGATCGCTTTCAACAACAACTCCGGCCTTTTGCTCATCCTCATACCACAGGTATTGTTGGGAGGTTGTTTATATCCAGTGGGTCTCCGGTTGGTGATAATGGCAGTGGCGAAGGTGTCGGGGAAGAAGGAGTGGAGATACATATTAAAGAACGAGTCAAAGATGGGGTATTCCCATCTCTTGCCAGGGCTCCATTGCGGGTTTCTGGCTGTGACAGTGGCAGGATTCATAGTGTTTCAATTGATTATATTTTGCTCATTGGAATGGAACAACTCCGACGGAATTTGGGATGGCTTGAATCCCTACCAGAAGTTTGTGGCCTCACTTTTTCAGGTCACTAACTCAAGACATACCGGAGAATCCATCGTCGATATCTCAGTCATCTCGCAGGCAATCTTGGTTGTTTTTGTTGTCATGATGTATCTCCCACCATACACAACTTTTTTACCCATAAGGAACAACAAAGAGAGAGCTTCAATAATGACTGATGGGAAGAACAGAAGACAATACTTAGTGGAATTATTCACATTCTCACAGCTCTCTTATTTGGCCATTTTTATCATTCTCATATGCATCACTGAGAAGCAAAAATTAAGAGATGATCCTCTTAACTTTACTCTCCTCAACATCACCATTGAAGTCATCAGTGCATATGGAAATGTTGGATTCTCAAGTGGGTATAGCTGCAAAAGACAAATTAAAGTTGATAGCTCTTGCAAAGATGCATGGTATGGATTTGCTGGAAGGTGGAGTTCAAAGGGAAAATTCATTCTTATTCTTGTCATGATTTTTGGAAGAATGAAAAGTTTTACTATGCATACTGGTAAAGCTTGGAAATTATCATAA 1497 42.02 MKNIPLYFLRSPPSLRLPLPPANPFLSHLSYFITISLFGFGALKLTQTRTSSSPNDLNLFFTSVSAVSVSSMSVVEMEVFSNFQLLIITTLMFLGGEVFVSAVAFQLSRRFKYLNEENHVDSVRSIEMEENGTSSSTMVTIDELSISRSCSKVLGHTIIGYLLATNVLGSFLIFIYIIVVPHAKQVLESKGINFFTFSIFSTVSTFTNCGFIPTNENMIAFNNNSGLLLILIPQVLLGGCLYPVGLRLVIMAVAKVSGKKEWRYILKNESKMGYSHLLPGLHCGFLAVTVAGFIVFQLIIFCSLEWNNSDGIWDGLNPYQKFVASLFQVTNSRHTGESIVDISVISQAILVVFVVMMYLPPYTTFLPIRNNKERASIMTDGKNRRQYLVELFTFSQLSYLAIFIILICITEKQKLRDDPLNFTLLNITIEVISAYGNVGFSSGYSCKRQIKVDSSCKDAWYGFAGRWSSKGKFILILVMIFGRMKSFTMHTGKAWKLS* 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19141577 19146256 + CsaV3_1G032180.1 Csa01g02210 516707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02210 498 PANTHER POTASSIUM TRANSPORT PROTEIN DDB_G0292412-RELATED 18 498 - -
Csa01g02210 498 Pfam Cation transport protein 45 489 IPR003445 GO:0006812|GO:0008324|GO:0055085
Csa01g02210 498 PANTHER SODIUM TRANSPORTER HKT1 18 498 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02208 Csa-Chr1:19123153 Csa01g02210 Csa-Chr1:19141577 1.41E-95 dispersed
Csa01g02209 Csa-Chr1:19127936 Csa01g02210 Csa-Chr1:19141577 8.13E-81 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02210 K24976 - csv:101206239 947.962