Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02254 ATGCGATGCTCTTGTTGTACAAAGCACTTCTTCCAGCGGTTTTTCACCGATGAGTTTCAAATCAACGGCCGCGGCGGCGGCGCTCTTCAAAGCACTTTCTTGTCTCCTGAGCTTTTGCCTTCTCTTGGCGCAACTATCAACCAAACCACTCACCTTCGTAAACATATCATTTCTCCTTTCAGTCCTCGTTATCGAGCATGGGAGATGTGGCTGGTGGTTCTAGTGATATATTCAGCTTGGATTTGTCCATTCGAATTCGCATTTCTTCCTTACAAGCAAAATGCTCTTTTCTTAATAGATCAATTTGTCAATGCCTTCTTTGCCATCGATATCATTCTAACTTTCTTCGTCGCTTATCTCGATTCTCAATCCTATCTTCTCGTCGACCACCCTAAAAAAATTGCACTTAGGTATTTATCGACTTGGTTTATATTCGACGTCTGTTCTACTGCTCCATTACAATCAATAAGTTTCTTATTCACAAATGAAACCGGAGAAGTTGGGTTTAAGCTTCTAAACATGCTCCGGCTATGGCGACTCCGACGGGTCAGCTCTCTTTTCGCAAGGCTGGAAAAGGACATAAGGTTCAATTATTTCTGGACCCGTTGCACAAAGCTCATTTCGGTTACATTATTTGCAGTACATTGTGCTGGGTGCTTTAATTATGTGATAGCAGATAAATATCCAGATTCAAAACAAACATGGATTGGTGCTGTGAACCCTAATTTCAAAGAAGAAAGTTTATGGAACCTTTATATTACTTCAATTTATTGGTCTATTACCACCTTAACAACCACTGGCTATGGCGATCTCCATGCTGAAAACCCTAGAGAAATGCTCTTTGATATTTTTTATATGCTCTTTAACTTGGGCTTCACTTCTTATCTCATCGGTAACATGACCAATCTCGTCGTTCATTGGACTAGTCGCACTCGAAACTTCAGAGATTCGGTGGAAGCTGCGACGGAATTTGCATTGAGAAACCAGTTACCAGAACGAATACAAGACCAGATGTTGTCGCACATATGTCTAAAGTTTAGAACGGAGGGGCTAAAGCAACAAGACACATTGAATGAGCTTCCAAAAGCCATTAGAGCCTCCATAGCTCACTATCTCTTCTATCCTATTGTTCAAAAGGCATACCTTTTTGAAGGAGTTTCTCATGACTTTCTTTTCCAATTGGTATCAGATGTGGAGGCTGAGTACTTCCCACCAAAGGAAGATATTATACTTCAAAATGAGGCTCAAACAGATCTCTATATATTGGTCTCAGGCAGTGTGGATCTAATATTATCCCATGTTGATGGCCATGATCATGATCAAGTTATAGGAAGAGCAACAAGTGGAGATATGTTTGGAGAATTTGGAGTTTTATGTCAAAAGCCACAACCTTTCACAATTAAAACCACAAAACTTTCTCAAATATTAAGGCTCAAGAGAACTTCTTTATTGTATATTTTTCAATCAAATACAGAGGATGGGAATATTATAATGAACAACTTTTTCATGAAAATGAAGGAATATGAAAGAATATTGGGGAATATTTGGTGTGATAATGGAGAACTAAAGGAACTTGATCAAAATCATTATTCTAAAGAGGATGATGATGAAAATATTAATATGGGAATTGATGACAATGAGTTAGATGAACATAGAATTGAGTTTGAAGAAGAAGAGGTTGGAGGGGATGAAAAGGAGATTATTAAATATTCTCATAACAACAGATTATTAGAAGGGAGAAATAATAATAATAAAGAAGGAGGTAAAACTTCAGATTTGATGAATTCTTCATCAGAAAATTTGGGAAGGATGAGGAGCTGTAAAAACTTGAATGTTTCAAAACAAATAAAGAAAAGGGTTACTGTATATGTGCAACCTGAAGATAGAAGCAAGGTCAAAAGTGAAATTGGAAAGTTGATACTTCTCCCAGATTCCATCCAACAGCTCTGCAAAATTGCTGGTGAAAAGTTTGGAGGGGAAATAATGGCTACAAAAGTGATGAGTGCAGATAATGCAGAAATTGATGATATAAATGTGATTCGTGATGGTGACCATTTGTTTCTTCTTTATAATCATATTCAAAATTGTGGTCTCCAATGA 2100 37.52 MRCSCCTKHFFQRFFTDEFQINGRGGGALQSTFLSPELLPSLGATINQTTHLRKHIISPFSPRYRAWEMWLVVLVIYSAWICPFEFAFLPYKQNALFLIDQFVNAFFAIDIILTFFVAYLDSQSYLLVDHPKKIALRYLSTWFIFDVCSTAPLQSISFLFTNETGEVGFKLLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLISVTLFAVHCAGCFNYVIADKYPDSKQTWIGAVNPNFKEESLWNLYITSIYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGFTSYLIGNMTNLVVHWTSRTRNFRDSVEAATEFALRNQLPERIQDQMLSHICLKFRTEGLKQQDTLNELPKAIRASIAHYLFYPIVQKAYLFEGVSHDFLFQLVSDVEAEYFPPKEDIILQNEAQTDLYILVSGSVDLILSHVDGHDHDQVIGRATSGDMFGEFGVLCQKPQPFTIKTTKLSQILRLKRTSLLYIFQSNTEDGNIIMNNFFMKMKEYERILGNIWCDNGELKELDQNHYSKEDDDENINMGIDDNELDEHRIEFEEEEVGGDEKEIIKYSHNNRLLEGRNNNNKEGGKTSDLMNSSSENLGRMRSCKNLNVSKQIKKRVTVYVQPEDRSKVKSEIGKLILLPDSIQQLCKIAGEKFGGEIMATKVMSADNAEIDDINVIRDGDHLFLLYNHIQNCGLQ* 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19667282 19673309 - CsaV3_1G032620.1 Csa01g02254 516751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02254 699 Pfam Cyclic nucleotide-binding domain 402 490 IPR000595 -
Csa01g02254 699 Pfam KHA, dimerisation domain of potassium ion channel 618 688 IPR021789 -
Csa01g02254 699 MobiDBLite consensus disorder prediction 578 598 - -
Csa01g02254 699 CDD CAP_ED 382 498 IPR000595 -
Csa01g02254 699 PRINTS EAG/ELK/ERG potassium channel family signature 77 84 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa01g02254 699 PRINTS EAG/ELK/ERG potassium channel family signature 100 110 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa01g02254 699 PRINTS EAG/ELK/ERG potassium channel family signature 111 120 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa01g02254 699 PRINTS EAG/ELK/ERG potassium channel family signature 252 269 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa01g02254 699 PRINTS EAG/ELK/ERG potassium channel family signature 278 289 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa01g02254 699 PRINTS EAG/ELK/ERG potassium channel family signature 296 305 IPR003938 GO:0005249|GO:0006813|GO:0016020
Csa01g02254 699 SUPERFAMILY cAMP-binding domain-like 309 501 IPR018490 -
Csa01g02254 699 PANTHER POTASSIUM CHANNEL AKT1 1 689 IPR045319 GO:0005249|GO:0006813
Csa01g02254 699 SMART cnmp_10 382 502 IPR000595 -
Csa01g02254 699 PANTHER POTASSIUM CHANNEL KAT1 1 689 - -
Csa01g02254 699 ProSiteProfiles KHA domain profile. 619 699 IPR021789 -
Csa01g02254 699 Gene3D - 65 305 - -
Csa01g02254 699 ProSiteProfiles cAMP/cGMP binding motif profile. 382 504 IPR000595 -
Csa01g02254 699 Gene3D Jelly Rolls 349 513 IPR014710 -
Csa01g02254 699 Pfam Ion transport protein 65 311 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Csa01g02254 699 SUPERFAMILY Voltage-gated potassium channels 59 305 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02254 Csa-Chr1:19667282 Csa03g04376 Csa-Chr3:38197021 1.05E-170 dispersed
Csa01g02254 Csa-Chr1:19667282 Csa06g01202 Csa-Chr6:10197240 5.07E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02254 K21867 - csv:101215858 1370.14