Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02269 ATGCTTCTGGGGAAGAAGGGTCTGATTGGGGTTGATATGAGAGCTCTATTTACGCCTTCCTCTGGGGCTTCTTTGGCCAAAGCGGCTTCTTCCAGGGAGATTTCGCTGTTGAACCCTGTTTGGGTTTATTCTAGGACTACCCAGAAGCCGTTTTATGCTATATTGCATAGAATTGATGTGGGGATTGTCATTGATTTGGAGCCTGCACGGTCTGTTGATCCTGCATTGTCGCTTGCTGGTGCTGTACAGTCACAGAAACTTGCGGTTAGAGCGATTTCCAGGTTGCAGGCTCTACCTAGTGGTGATATCGGTATTCTATGTGATACGGTTGTCGAAGATATTCAAAAACTTACCGGGTATGATAGAGTGATGGTGTATAAGTTCCATGATGACGAACATGGTGAAGTAGTGTCAGAAATCAGAAGGTCTGACTTAGAGCCATACCTTGGTTTGCATTATCCTGCCATTGATATACCTCAAGCAGCTCGTTTTTTGTTCAAGCAGAACCGCATTAGGATGATTTGTGATTGCAATGCGAAGCCGGTGCCAGTCATTCAAAGTGATGATCTAAAGCAGCCTCTTTGTTTGGTAAATTCAACAATAAGAGCACCACATAGTTGTCATTTGCAATACATGGCAAATATGAGTACCTTATCTTCATTAGCAATGGCAATAGTTATGAACAGTGATGACTCACCAACAAGGCTATGGGGTCTGGTAGTGTGTCACCATACTTCTCCTCGATATGTCCCTTTCCCACTTCGTTATGCCTGCGAGTTTCTCATGCAGGCGTTCGGGCTGCAGCTTTACATGGAACTTCAATTGGCATCACAATTAACAGAGAAAAAGATCCTCAAGACACAAACTTTACTTTGTGACATGCTTCTCCGAGGCTCTCCATGTGCATTGCTGACTCGGTCTCCTAGTATAATGGATCTCGTGAAGTGTGATGGTGCTGCATTGTACTATAAGGGGGCATGCTATTTATTAGGTATAACTCCAACTGAAGCACAAGTAAAAGATCTTGCAGAGTGGATACTCAATAATCATGGGGATTCTACAGGGCTGAGCACGGATAGTTTGGCTGATGCTGGCTATCCTGAAGCTGCTTCACTAGGTGATGCAGTGTGCGGTATGGCAACTGCAAGAATCACTTCAAAGGATTTCTTATTCTGGTTCAGGTCCCATGTTGCAAAGGAAATTCAATGGGGAGGAGCCAAGCATCATCCAGACGATAAGGACGATAGTGGAAGAATGCATCCAAGATCATCATTTAAAGCATTTCTTGAAGTTGCAAAGAGTAGAAGTTTGTCTTGGGAAGTTCAGGAAATAAATGCCATTCACTCATTGCAGCTAATAATGAGGGAGTCTTTTCCGAACTCTGGGGACAGTAATTCAAAGGCAGAAAATTCTCCCCAGTTGAGTGATGCTGAGATGCAGGATATCAATGAACTCAGTTCAGTAGCTTGTGAAATGGTTAGGTTGATTGAAACAGCAACGGTTCCAATTTTTGGTGTTGACTCAACTGGTTTGATCAATGGATGGAATGCTAAAATTTCTGAACTTGTGGGATTACATACTGGAGAAGCTCTGGGGAAATCTCTGGTTAATGAGATTGTTCATGAAGATTCACGTGGAACTGCCGAAGATTTACTTTCCTGTGCTCTGCAAGGTAAGGAAGACAAAAATGTGGAGTTAAAACTGAGAAGTTTTCGAACTGATAAAGAACACCCTAACGTGTATATTGTAGTTAACGCTTGCACAAGTAGAGATTACACAAACAAAGTTGTTGGAGTTTGCTTTGTTGGGCAAGATCTTACATCTGAGAAAGGTGTGATGGATAAATTTATCCGTCTGCAGGGAGATTATAAGACTATTATTGAAAGTCTGAGCCCATTGATTCCTCCAATGTTTGTTTCAGATGAGAATGGTTACTGCTGTGAATGGACTGCAGCCATGGAAAAGCTTACTGGTTGGAGGAAAAATGAAGTTGTAGGAAAAATGCTAGCTGGGGAGATCTTTGGGAATTTCTGTAGATTGAAAGGTCTAGATACCCTCACTAGGTTCATGATTCTATTATATCAAGGCATTAGTGGTCAAGTAACCGAAAAGTTTCCATTAGGATTTTTCAATAAGGATGGGAATTATGTAGATGTGCTGTTAACATCGAACAAGAGAACTGATGCCGAAGGAAATGCCATTGGTTGTATCTGCTTCCTGCAAATTGTTCAGCCCAACTTACATGGGGTCTTGGAAGGACTTGGGACGGGTGATAGAGAGGCCATTCTGCAGCATAAGGAGTTGAGCTTCTTAAAGCATGAGGTGAAAAATCCTTTAAATGGCCTCAGATTTATGCATGAACTCCTTGTAAACTCTGGTATTACCGAAAACCAGAAACTTTTCCTTGATACTAGTGATGCATGCGAGAGACAAATCATGACAATCATAGAGGATATGGACTTCAGAAGTTTAGAAGGGGGCCAAGTAGAGATCAACAGACAAGACTTTCTCCTTGGGAGTGTTTTGGATGCCATTATCTGTCAAATCATGATTGTTGTCAGAGAGAGGAACATTCAACTTTTTCATGAAATTCCAGAAGAAATCAAAACGTTAACTCTTTGTGGCGACCAAATTAAGCTTCAGATGGTTTTATCAGATTTCTTACTTAACATAGTGCAGTATGCGCCTGTTCTGGATGGTTGGGTTGAAATCAAAATTTCTTCTGGTTTGAAGCTTATACAAGATGGAAATGAGCACATTCACTTGCAGATCAGAATGTCACATCCAGGTCAAGGTTTGCCTCATGAACTAATCCAAGATATGGTTGGAGGAGGACAACAGTGGACTTCAGAACAAGGCCTGGCCCTAAACCTGTCACGCAGACTTCTTAATAAATTGAACGGTAATGTCCGCTATGTTAGAGAGCAAACCAAATGCTACTTCCTCATCGACCTCGAACTCAAGTTAAGGCGCTTGAGAGGGTCAACAGAAGCTACTACGAGCCAAAGGACTTGA 3015 42.09 MLLGKKGLIGVDMRALFTPSSGASLAKAASSREISLLNPVWVYSRTTQKPFYAILHRIDVGIVIDLEPARSVDPALSLAGAVQSQKLAVRAISRLQALPSGDIGILCDTVVEDIQKLTGYDRVMVYKFHDDEHGEVVSEIRRSDLEPYLGLHYPAIDIPQAARFLFKQNRIRMICDCNAKPVPVIQSDDLKQPLCLVNSTIRAPHSCHLQYMANMSTLSSLAMAIVMNSDDSPTRLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMELQLASQLTEKKILKTQTLLCDMLLRGSPCALLTRSPSIMDLVKCDGAALYYKGACYLLGITPTEAQVKDLAEWILNNHGDSTGLSTDSLADAGYPEAASLGDAVCGMATARITSKDFLFWFRSHVAKEIQWGGAKHHPDDKDDSGRMHPRSSFKAFLEVAKSRSLSWEVQEINAIHSLQLIMRESFPNSGDSNSKAENSPQLSDAEMQDINELSSVACEMVRLIETATVPIFGVDSTGLINGWNAKISELVGLHTGEALGKSLVNEIVHEDSRGTAEDLLSCALQGKEDKNVELKLRSFRTDKEHPNVYIVVNACTSRDYTNKVVGVCFVGQDLTSEKGVMDKFIRLQGDYKTIIESLSPLIPPMFVSDENGYCCEWTAAMEKLTGWRKNEVVGKMLAGEIFGNFCRLKGLDTLTRFMILLYQGISGQVTEKFPLGFFNKDGNYVDVLLTSNKRTDAEGNAIGCICFLQIVQPNLHGVLEGLGTGDREAILQHKELSFLKHEVKNPLNGLRFMHELLVNSGITENQKLFLDTSDACERQIMTIIEDMDFRSLEGGQVEINRQDFLLGSVLDAIICQIMIVVRERNIQLFHEIPEEIKTLTLCGDQIKLQMVLSDFLLNIVQYAPVLDGWVEIKISSGLKLIQDGNEHIHLQIRMSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGSTEATTSQRT* 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19834955 19845910 + CsaV3_1G032770.1 Csa01g02269 516766

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02269 1004 Gene3D - 805 981 IPR036890 -
Csa01g02269 1004 CDD HATPase_Phy-like 875 987 IPR044767 -
Csa01g02269 1004 PANTHER TWO-COMPONENT HISTIDINE KINASE 9 993 - -
Csa01g02269 1004 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 828 985 IPR036890 -
Csa01g02269 1004 SUPERFAMILY GAF domain-like 281 457 - -
Csa01g02269 1004 SMART pas_2 621 691 IPR000014 -
Csa01g02269 1004 SMART pas_2 490 557 IPR000014 -
Csa01g02269 1004 SMART HisKA_10 763 827 IPR003661 GO:0000155|GO:0007165
Csa01g02269 1004 ProSitePatterns Phytochrome chromophore attachment site signature. 202 211 IPR013516 -
Csa01g02269 1004 TIGRFAM sensory_box: PAS domain S-box protein 495 610 IPR000014 -
Csa01g02269 1004 SUPERFAMILY PYP-like sensor domain (PAS domain) 7 70 IPR035965 -
Csa01g02269 1004 ProSiteProfiles PAS repeat profile. 622 674 IPR000014 -
Csa01g02269 1004 CDD PAS 499 606 IPR000014 -
Csa01g02269 1004 SUPERFAMILY GAF domain-like 82 269 - -
Csa01g02269 1004 SUPERFAMILY PYP-like sensor domain (PAS domain) 636 738 IPR035965 -
Csa01g02269 1004 Gene3D - 83 434 IPR029016 -
Csa01g02269 1004 SUPERFAMILY PYP-like sensor domain (PAS domain) 494 602 IPR035965 -
Csa01g02269 1004 Pfam Phytochrome region 286 458 IPR013515 GO:0006355|GO:0009584
Csa01g02269 1004 SMART HKATPase_4 875 987 IPR003594 -
Csa01g02269 1004 PANTHER PHYTOCHROME E 9 993 - -
Csa01g02269 1004 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 102 263 IPR016132 -
Csa01g02269 1004 Pfam PAS fold 622 741 IPR013767 GO:0006355
Csa01g02269 1004 Pfam PAS fold 491 605 IPR013767 GO:0006355
Csa01g02269 1004 ProSiteProfiles Histidine kinase domain profile. 770 989 IPR005467 -
Csa01g02269 1004 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 875 985 IPR003594 -
Csa01g02269 1004 Gene3D PAS domain 7 205 - -
Csa01g02269 1004 CDD HisKA 768 823 IPR003661 GO:0000155|GO:0007165
Csa01g02269 1004 CDD PAS 633 741 IPR000014 -
Csa01g02269 1004 SMART gaf_1 102 283 IPR003018 GO:0005515
Csa01g02269 1004 Pfam PAS fold 5 69 IPR013654 GO:0006355
Csa01g02269 1004 Gene3D PAS domain 489 620 - -
Csa01g02269 1004 ProSiteProfiles PAS repeat profile. 488 559 IPR000014 -
Csa01g02269 1004 Gene3D - 278 451 IPR043150 -
Csa01g02269 1004 PRINTS Phytochrome signature 17 39 IPR001294 GO:0006355|GO:0009584
Csa01g02269 1004 PRINTS Phytochrome signature 117 136 IPR001294 GO:0006355|GO:0009584
Csa01g02269 1004 PRINTS Phytochrome signature 202 223 IPR001294 GO:0006355|GO:0009584
Csa01g02269 1004 PRINTS Phytochrome signature 303 323 IPR001294 GO:0006355|GO:0009584
Csa01g02269 1004 PRINTS Phytochrome signature 388 407 IPR001294 GO:0006355|GO:0009584
Csa01g02269 1004 PRINTS Phytochrome signature 421 439 IPR001294 GO:0006355|GO:0009584
Csa01g02269 1004 PRINTS Phytochrome signature 491 507 IPR001294 GO:0006355|GO:0009584
Csa01g02269 1004 PRINTS Phytochrome signature 510 525 IPR001294 GO:0006355|GO:0009584
Csa01g02269 1004 PRINTS Phytochrome signature 584 601 IPR001294 GO:0006355|GO:0009584
Csa01g02269 1004 PRINTS Phytochrome signature 604 624 IPR001294 GO:0006355|GO:0009584
Csa01g02269 1004 Pfam GAF domain 104 273 IPR003018 GO:0005515
Csa01g02269 1004 Pfam His Kinase A (phospho-acceptor) domain 768 827 IPR003661 GO:0000155|GO:0007165
Csa01g02269 1004 Gene3D PAS domain 636 746 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02269 K12123 PHYE; phytochrome E - csv:101214900 1989.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02269 Csa-Chr1:19834955 Csa03g01519 Csa-Chr3:11284430 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g343 . . . . . . Bma14g00963 Bma01g01487 . Cmo18g00427 . . . . . Cpe09g00775 . . . . . . . . . . . . . . . . . . . . . Chy12g00013 . . . . . Bpe02g00962 . . . Sed01g2202 . . Cma13g00567 Cma18g00452 Car13g00449 Car18g00423 . Cpe20g00493 Bhi08g02111 Tan05g2567 Cmetu12g0178 Lac10g1014 Hepe07g1806 . . Cla03g00672 Cam03g0721 Cec03g0697 Cco03g0733 Clacu03g0719 Cmu03g1310 Cre03g1005 Lsi02g00857 Csa01g02269 . Cme12g01234
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g00070 . 5 1187 Histidine Kinase Gene Family AT2G17820 65.2 0.0e+00 1443.3
Csa05g01966 CCT 24 987 Histidine Kinase Gene Family AT2G01830 72.1 0.0e+00 1332.8
Csa05g00994 CCT 3 953 Histidine Kinase Gene Family AT2G01830 72.3 0.0e+00 1307.0
Csa06g00827 . 58 1002 Histidine Kinase Gene Family AT2G01830 53.5 3.1e-276 948.3
Csa06g00945 . 304 1259 Histidine Kinase Gene Family AT2G01830 51.8 3.1e-268 921.8
Csa04g02603 . 1 993 Histidine Kinase Gene Family AT5G10720 57.5 1.5e-290 995.7
Csa06g02224 . 1 1120 Histidine Kinase Gene Family AT1G09570 80.1 0.0e+00 1832.0
Csa06g02220 . 3 1145 Histidine Kinase Gene Family AT1G09570 71.1 0.0e+00 1620.5
Csa07g00253 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.3 0.0e+00 1214.9
Csa03g01519 . 34 1121 Histidine Kinase Gene Family AT1G09570 54.7 0.0e+00 1196.4
Csa03g01519 . 13 1062 Histidine Kinase Gene Family AT2G18790 78.9 0.0e+00 1670.6
Csa01g02269 . 9 925 Histidine Kinase Gene Family AT2G18790 61.4 0.0e+00 1155.2
Csa06g02224 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.3 0.0e+00 1087.0
Csa07g00253 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.2 1.0e-313 1072.8
Csa06g02220 . 22 1049 Histidine Kinase Gene Family AT2G18790 52.1 4.3e-308 1054.3
Csa07g00253 . 18 1114 Histidine Kinase Gene Family AT5G35840 62.4 0.0e+00 1373.2
Csa03g01519 . 21 1123 Histidine Kinase Gene Family AT5G35840 53.3 0.0e+00 1153.3
Csa06g02224 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1117.8
Csa03g01519 . 3 1123 Histidine Kinase Gene Family AT4G16250 76.0 0.0e+00 1715.3
Csa01g02269 . 9 987 Histidine Kinase Gene Family AT4G16250 58.7 0.0e+00 1192.2
Csa06g02224 . 8 1115 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1136.7
Csa07g00253 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.0 0.0e+00 1114.8
Csa01g02269 . 6 988 Histidine Kinase Gene Family AT4G18130 65.2 0.0e+00 1287.3
Csa03g01519 . 38 1121 Histidine Kinase Gene Family AT4G18130 58.9 0.0e+00 1273.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009148 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 2 1 1 34