Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02269 ATGCTTCTGGGGAAGAAGGGTCTGATTGGGGTTGATATGAGAGCTCTATTTACGCCTTCCTCTGGGGCTTCTTTGGCCAAAGCGGCTTCTTCCAGGGAGATTTCGCTGTTGAACCCTGTTTGGGTTTATTCTAGGACTACCCAGAAGCCGTTTTATGCTATATTGCATAGAATTGATGTGGGGATTGTCATTGATTTGGAGCCTGCACGGTCTGTTGATCCTGCATTGTCGCTTGCTGGTGCTGTACAGTCACAGAAACTTGCGGTTAGAGCGATTTCCAGGTTGCAGGCTCTACCTAGTGGTGATATCGGTATTCTATGTGATACGGTTGTCGAAGATATTCAAAAACTTACCGGGTATGATAGAGTGATGGTGTATAAGTTCCATGATGACGAACATGGTGAAGTAGTGTCAGAAATCAGAAGGTCTGACTTAGAGCCATACCTTGGTTTGCATTATCCTGCCATTGATATACCTCAAGCAGCTCGTTTTTTGTTCAAGCAGAACCGCATTAGGATGATTTGTGATTGCAATGCGAAGCCGGTGCCAGTCATTCAAAGTGATGATCTAAAGCAGCCTCTTTGTTTGGTAAATTCAACAATAAGAGCACCACATAGTTGTCATTTGCAATACATGGCAAATATGAGTACCTTATCTTCATTAGCAATGGCAATAGTTATGAACAGTGATGACTCACCAACAAGGCTATGGGGTCTGGTAGTGTGTCACCATACTTCTCCTCGATATGTCCCTTTCCCACTTCGTTATGCCTGCGAGTTTCTCATGCAGGCGTTCGGGCTGCAGCTTTACATGGAACTTCAATTGGCATCACAATTAACAGAGAAAAAGATCCTCAAGACACAAACTTTACTTTGTGACATGCTTCTCCGAGGCTCTCCATGTGCATTGCTGACTCGGTCTCCTAGTATAATGGATCTCGTGAAGTGTGATGGTGCTGCATTGTACTATAAGGGGGCATGCTATTTATTAGGTATAACTCCAACTGAAGCACAAGTAAAAGATCTTGCAGAGTGGATACTCAATAATCATGGGGATTCTACAGGGCTGAGCACGGATAGTTTGGCTGATGCTGGCTATCCTGAAGCTGCTTCACTAGGTGATGCAGTGTGCGGTATGGCAACTGCAAGAATCACTTCAAAGGATTTCTTATTCTGGTTCAGGTCCCATGTTGCAAAGGAAATTCAATGGGGAGGAGCCAAGCATCATCCAGACGATAAGGACGATAGTGGAAGAATGCATCCAAGATCATCATTTAAAGCATTTCTTGAAGTTGCAAAGAGTAGAAGTTTGTCTTGGGAAGTTCAGGAAATAAATGCCATTCACTCATTGCAGCTAATAATGAGGGAGTCTTTTCCGAACTCTGGGGACAGTAATTCAAAGGCAGAAAATTCTCCCCAGTTGAGTGATGCTGAGATGCAGGATATCAATGAACTCAGTTCAGTAGCTTGTGAAATGGTTAGGTTGATTGAAACAGCAACGGTTCCAATTTTTGGTGTTGACTCAACTGGTTTGATCAATGGATGGAATGCTAAAATTTCTGAACTTGTGGGATTACATACTGGAGAAGCTCTGGGGAAATCTCTGGTTAATGAGATTGTTCATGAAGATTCACGTGGAACTGCCGAAGATTTACTTTCCTGTGCTCTGCAAGGTAAGGAAGACAAAAATGTGGAGTTAAAACTGAGAAGTTTTCGAACTGATAAAGAACACCCTAACGTGTATATTGTAGTTAACGCTTGCACAAGTAGAGATTACACAAACAAAGTTGTTGGAGTTTGCTTTGTTGGGCAAGATCTTACATCTGAGAAAGGTGTGATGGATAAATTTATCCGTCTGCAGGGAGATTATAAGACTATTATTGAAAGTCTGAGCCCATTGATTCCTCCAATGTTTGTTTCAGATGAGAATGGTTACTGCTGTGAATGGACTGCAGCCATGGAAAAGCTTACTGGTTGGAGGAAAAATGAAGTTGTAGGAAAAATGCTAGCTGGGGAGATCTTTGGGAATTTCTGTAGATTGAAAGGTCTAGATACCCTCACTAGGTTCATGATTCTATTATATCAAGGCATTAGTGGTCAAGTAACCGAAAAGTTTCCATTAGGATTTTTCAATAAGGATGGGAATTATGTAGATGTGCTGTTAACATCGAACAAGAGAACTGATGCCGAAGGAAATGCCATTGGTTGTATCTGCTTCCTGCAAATTGTTCAGCCCAACTTACATGGGGTCTTGGAAGGACTTGGGACGGGTGATAGAGAGGCCATTCTGCAGCATAAGGAGTTGAGCTTCTTAAAGCATGAGGTGAAAAATCCTTTAAATGGCCTCAGATTTATGCATGAACTCCTTGTAAACTCTGGTATTACCGAAAACCAGAAACTTTTCCTTGATACTAGTGATGCATGCGAGAGACAAATCATGACAATCATAGAGGATATGGACTTCAGAAGTTTAGAAGGGGGCCAAGTAGAGATCAACAGACAAGACTTTCTCCTTGGGAGTGTTTTGGATGCCATTATCTGTCAAATCATGATTGTTGTCAGAGAGAGGAACATTCAACTTTTTCATGAAATTCCAGAAGAAATCAAAACGTTAACTCTTTGTGGCGACCAAATTAAGCTTCAGATGGTTTTATCAGATTTCTTACTTAACATAGTGCAGTATGCGCCTGTTCTGGATGGTTGGGTTGAAATCAAAATTTCTTCTGGTTTGAAGCTTATACAAGATGGAAATGAGCACATTCACTTGCAGATCAGAATGTCACATCCAGGTCAAGGTTTGCCTCATGAACTAATCCAAGATATGGTTGGAGGAGGACAACAGTGGACTTCAGAACAAGGCCTGGCCCTAAACCTGTCACGCAGACTTCTTAATAAATTGAACGGTAATGTCCGCTATGTTAGAGAGCAAACCAAATGCTACTTCCTCATCGACCTCGAACTCAAGTTAAGGCGCTTGAGAGGGTCAACAGAAGCTACTACGAGCCAAAGGACTTGA 3015 42.09 MLLGKKGLIGVDMRALFTPSSGASLAKAASSREISLLNPVWVYSRTTQKPFYAILHRIDVGIVIDLEPARSVDPALSLAGAVQSQKLAVRAISRLQALPSGDIGILCDTVVEDIQKLTGYDRVMVYKFHDDEHGEVVSEIRRSDLEPYLGLHYPAIDIPQAARFLFKQNRIRMICDCNAKPVPVIQSDDLKQPLCLVNSTIRAPHSCHLQYMANMSTLSSLAMAIVMNSDDSPTRLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMELQLASQLTEKKILKTQTLLCDMLLRGSPCALLTRSPSIMDLVKCDGAALYYKGACYLLGITPTEAQVKDLAEWILNNHGDSTGLSTDSLADAGYPEAASLGDAVCGMATARITSKDFLFWFRSHVAKEIQWGGAKHHPDDKDDSGRMHPRSSFKAFLEVAKSRSLSWEVQEINAIHSLQLIMRESFPNSGDSNSKAENSPQLSDAEMQDINELSSVACEMVRLIETATVPIFGVDSTGLINGWNAKISELVGLHTGEALGKSLVNEIVHEDSRGTAEDLLSCALQGKEDKNVELKLRSFRTDKEHPNVYIVVNACTSRDYTNKVVGVCFVGQDLTSEKGVMDKFIRLQGDYKTIIESLSPLIPPMFVSDENGYCCEWTAAMEKLTGWRKNEVVGKMLAGEIFGNFCRLKGLDTLTRFMILLYQGISGQVTEKFPLGFFNKDGNYVDVLLTSNKRTDAEGNAIGCICFLQIVQPNLHGVLEGLGTGDREAILQHKELSFLKHEVKNPLNGLRFMHELLVNSGITENQKLFLDTSDACERQIMTIIEDMDFRSLEGGQVEINRQDFLLGSVLDAIICQIMIVVRERNIQLFHEIPEEIKTLTLCGDQIKLQMVLSDFLLNIVQYAPVLDGWVEIKISSGLKLIQDGNEHIHLQIRMSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGSTEATTSQRT* 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19834955 19845910 + CsaV3_1G032770.1 Csa01g02269 516766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02269 1004 Gene3D - 805 981 IPR036890 -
Csa01g02269 1004 CDD HATPase_Phy-like 875 987 IPR044767 -
Csa01g02269 1004 PANTHER TWO-COMPONENT HISTIDINE KINASE 9 993 - -
Csa01g02269 1004 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 828 985 IPR036890 -
Csa01g02269 1004 SUPERFAMILY GAF domain-like 281 457 - -
Csa01g02269 1004 SMART pas_2 621 691 IPR000014 -
Csa01g02269 1004 SMART pas_2 490 557 IPR000014 -
Csa01g02269 1004 SMART HisKA_10 763 827 IPR003661 GO:0000155|GO:0007165
Csa01g02269 1004 ProSitePatterns Phytochrome chromophore attachment site signature. 202 211 IPR013516 -
Csa01g02269 1004 TIGRFAM sensory_box: PAS domain S-box protein 495 610 IPR000014 -
Csa01g02269 1004 SUPERFAMILY PYP-like sensor domain (PAS domain) 7 70 IPR035965 -
Csa01g02269 1004 ProSiteProfiles PAS repeat profile. 622 674 IPR000014 -
Csa01g02269 1004 CDD PAS 499 606 IPR000014 -
Csa01g02269 1004 SUPERFAMILY GAF domain-like 82 269 - -
Csa01g02269 1004 SUPERFAMILY PYP-like sensor domain (PAS domain) 636 738 IPR035965 -
Csa01g02269 1004 Gene3D - 83 434 IPR029016 -
Csa01g02269 1004 SUPERFAMILY PYP-like sensor domain (PAS domain) 494 602 IPR035965 -
Csa01g02269 1004 Pfam Phytochrome region 286 458 IPR013515 GO:0006355|GO:0009584
Csa01g02269 1004 SMART HKATPase_4 875 987 IPR003594 -
Csa01g02269 1004 PANTHER PHYTOCHROME E 9 993 - -
Csa01g02269 1004 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 102 263 IPR016132 -
Csa01g02269 1004 Pfam PAS fold 622 741 IPR013767 GO:0006355
Csa01g02269 1004 Pfam PAS fold 491 605 IPR013767 GO:0006355
Csa01g02269 1004 ProSiteProfiles Histidine kinase domain profile. 770 989 IPR005467 -
Csa01g02269 1004 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 875 985 IPR003594 -
Csa01g02269 1004 Gene3D PAS domain 7 205 - -
Csa01g02269 1004 CDD HisKA 768 823 IPR003661 GO:0000155|GO:0007165
Csa01g02269 1004 CDD PAS 633 741 IPR000014 -
Csa01g02269 1004 SMART gaf_1 102 283 IPR003018 GO:0005515
Csa01g02269 1004 Pfam PAS fold 5 69 IPR013654 GO:0006355
Csa01g02269 1004 Gene3D PAS domain 489 620 - -
Csa01g02269 1004 ProSiteProfiles PAS repeat profile. 488 559 IPR000014 -
Csa01g02269 1004 Gene3D - 278 451 IPR043150 -
Csa01g02269 1004 PRINTS Phytochrome signature 17 39 IPR001294 GO:0006355|GO:0009584
Csa01g02269 1004 PRINTS Phytochrome signature 117 136 IPR001294 GO:0006355|GO:0009584
Csa01g02269 1004 PRINTS Phytochrome signature 202 223 IPR001294 GO:0006355|GO:0009584
Csa01g02269 1004 PRINTS Phytochrome signature 303 323 IPR001294 GO:0006355|GO:0009584
Csa01g02269 1004 PRINTS Phytochrome signature 388 407 IPR001294 GO:0006355|GO:0009584
Csa01g02269 1004 PRINTS Phytochrome signature 421 439 IPR001294 GO:0006355|GO:0009584
Csa01g02269 1004 PRINTS Phytochrome signature 491 507 IPR001294 GO:0006355|GO:0009584
Csa01g02269 1004 PRINTS Phytochrome signature 510 525 IPR001294 GO:0006355|GO:0009584
Csa01g02269 1004 PRINTS Phytochrome signature 584 601 IPR001294 GO:0006355|GO:0009584
Csa01g02269 1004 PRINTS Phytochrome signature 604 624 IPR001294 GO:0006355|GO:0009584
Csa01g02269 1004 Pfam GAF domain 104 273 IPR003018 GO:0005515
Csa01g02269 1004 Pfam His Kinase A (phospho-acceptor) domain 768 827 IPR003661 GO:0000155|GO:0007165
Csa01g02269 1004 Gene3D PAS domain 636 746 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02269 Csa-Chr1:19834955 Csa03g01519 Csa-Chr3:11284430 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02269 K12123 - csv:101214900 1989.16