Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02281 ATGCTGTCAAACAATCATAACAACAGTCCTCCTACTCCTAGAACCAGATTAGAGAGACTTCTTAGGGAAAGAGAGCTCAGGAGATCGAACAAACCTTCTTCTCTCAATGAAGAAGCACGAGATGCTTACAGTCTGGGAGAAGTCAATAGTTACGATCTCTTCACCAATGCTGGTGATAGTTGTGGGTCGTTTAATGAGGAAGATGTCTTAGAAGGGATATCGGTGGTAAAAGATATCTTTGATGGATTCCAAAGGCCGGAAGGGAGGACTTATAAGCAACGTCTTCTTGTTGTAGCGAACAGGTTACCTGTGTCTGCTGTTAGAAAAGGGAAGGAGACATGGCATCTCGAAATTAGCGTTGGTGGTTTAGTCAGTGCACTTTTAGGACTAAAGGAGTTTGAGGCAAGGTGGATTGGTTGGGCTGGTGTGAATGTACCTGATGAAGCAGGACAGAGAGCCCTAGAGAAAGCATTAGCTGAAAAGAAATGCATACCGGTCTTTCTTGATGAGGAGATTGTTCATCAGTATTACAATGGCTACTGTAACAACATCTTGTGGCCTCTATTTCATTATCTTGGTCTCCCACAAGAAGACCGTCTTGCAACAACACGAAGTTTTCAGTCACAGTTTGATGCATATAAGAAGGCAAACCAAATGTTTGCTGATGTTGTAAACAAATATTATGAAGAGGGAGATGTTGTTTGGTGTCACGATTATCACTTGATGTTTCTCCCAAAATGTCTTAAAGAGCACAATAATACGATGAAAGTTGGTTGGTTCCTTCACACCCCATTTCCATCCTCAGAAATACATAGAACTCTACCATCTCGTTCAGAGCTGCTGAGATCTGTTCTTGCAGCTGATTTAGTTGGTTTCCACACATACGATTATGCCAGGCATTTTGTTAGCGCCTGCACCCGTATTCTTGGATTGGAAGGCACACCTGAAGGAGTAGAGGATCAAGGAAAACTCACTCGCATAGCTGCTTTTCCTATTGGAATAGATTCTGAACGATTCATACGAGCCTTGAAACTCCCTCAAGTCCAGGATCACATTAAAGAACTACAAGAAAGATTTGCAGGAAGAAAGGTAATGCTGGGTGTTGATCGTCTTGATATGATTAAGGGAATACCCCAAAAGATTTTGGCATTTGAAAAATTTCTTGAAGAAAATCCAAAGTGGCGTGATAAAGTAGTTTTGCTGCAAATTGCAGTGCCAACAAGAACAGATGTTCCCGAGTATCAAAAGCTAACGAGTCAGGTTCATGAGATCGTCGGGCGAATTAATGGGAGATTTGGCACTCTTAGTGCAGTTCCAATACATCATCTAGATCGTTCACTCGACTTCCATGCATTATGTGCTTTATATGCTGTCACCGATGTGGCACTAGTTACATCTTTGAGAGACGGAATGAATCTTGTGAGCTATGAGTTTGTTGCCTGTCAAGCTTCCAAGAAAGGTGTTCTTATTCTAAGTGAGTTTGCAGGCGCAGCACAGTCATTAGGTGCCGGAGCTATTTTAGTTAATCCATGGAATATCACTGAAGTTGCTGCTTCAATTGGTTATGCTTTGAATATGCCAGCTGATGAAAGAGAAAGACGACACCATCATAATTTTATGCATGTTACAACTCATACATCCCAAGAATGGGCTGCAACATTTGTGAGCGAACTCAACGACACCATAGTTGAAGCTCAGATCAGAACCAGACAGATACCACCTTTACTTCCAATTAGAGAAGCAGTGAACTGTTATTCTCGATCACATAATCGATTGATTATTTTGGGTTTCAATGCTACCTTAACAGAAGCACTTGATGCCCTTGGAAGAAGATATGGCCAAATTAGAGACATGGATCTTAGATTACATCCAGATGTGAAAGAGCCCTTGAAGAAGCTTTGCGATGACCAGAATACTACAGTGGTTGTCCTCAGTGGGAGTGACAGAAGTGTCCTAGATGATAATTTTGGCAACTACAACATGTGGTTGGCAGCAGAAAACGGGATGTTCTTACGTCCTACAAAGGGTGAATGGATGACGACAATGCCTGAAAATTTACATATGGATTGGGTTGAGAGTGTTAAGCATGTATTCGAATATTTTACTGAAAGAACTCCGAGATCCCATTTCGAGCTTCGTGAAACTTCACTGGTGTGGAACTACAAATATGCAGATGTTGAGTTTGGAAGACTTCAAGCGAGGGACTTGTTGCAGCATCTATGGACTGGTCCAATCTCAAATGCATCAGTTGATGTGGTGCAAGGCAGTCGCTCAGTCGAGGTTCGAGCAGTTGGTGTTACAAAGGGTGCTGCCATTGATCGAATATTGGGAGAAATAGTTCGTGACAAAGGCATAAACAAGCCTATTGACTATGTTCTCTGTGTTGGACACTTCCTAACCAAGGATGAAGATGTCTATACATTTTTCGAACCCGACCTTCCTATCGAAGTGCCAGCTGCAGCAGCGAGAAATACAGTCACCAATTCTTTTGGAGGAGTACCAGCACCAAAGATCTCAAACAATGGAGTCTCACCAAGCAGGTCAGCACGTCTCAAGAAACAACGCTCCCTTACCATTTTAGAAAAAAGAGCAAATACCCATGGGAGTGCAGTGTTTTGGAGGCCTGTAGTTCAGGATCGATTGTCGCTGCACGAGGGTTCGTCTGTTCTCGATCTCAAGGGCGACGATTACTTCTCCTGTGCCGTGGGACGGAAAAGATCCAACGCAAGATATCTTCTTGGATCATCAGATGATGTTGTCACACTTGTGAAAGAGTTGTCAGAATGTTCAGTGTCAAATTTGAGTTAG 2808 42.63 MLSNNHNNSPPTPRTRLERLLRERELRRSNKPSSLNEEARDAYSLGEVNSYDLFTNAGDSCGSFNEEDVLEGISVVKDIFDGFQRPEGRTYKQRLLVVANRLPVSAVRKGKETWHLEISVGGLVSALLGLKEFEARWIGWAGVNVPDEAGQRALEKALAEKKCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFDAYKKANQMFADVVNKYYEEGDVVWCHDYHLMFLPKCLKEHNNTMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRIAAFPIGIDSERFIRALKLPQVQDHIKELQERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPKWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLSAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAASIGYALNMPADERERRHHHNFMHVTTHTSQEWAATFVSELNDTIVEAQIRTRQIPPLLPIREAVNCYSRSHNRLIILGFNATLTEALDALGRRYGQIRDMDLRLHPDVKEPLKKLCDDQNTTVVVLSGSDRSVLDDNFGNYNMWLAAENGMFLRPTKGEWMTTMPENLHMDWVESVKHVFEYFTERTPRSHFELRETSLVWNYKYADVEFGRLQARDLLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVRDKGINKPIDYVLCVGHFLTKDEDVYTFFEPDLPIEVPAAAARNTVTNSFGGVPAPKISNNGVSPSRSARLKKQRSLTILEKRANTHGSAVFWRPVVQDRLSLHEGSSVLDLKGDDYFSCAVGRKRSNARYLLGSSDDVVTLVKELSECSVSNLS* 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19948842 19956958 - CsaV3_1G032890.1 Csa01g02281 516778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02281 935 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 94 559 IPR012766 GO:0003825|GO:0005992
Csa01g02281 935 Pfam Trehalose-phosphatase 617 818 IPR003337 GO:0003824|GO:0005992
Csa01g02281 935 Gene3D - 618 819 IPR023214 -
Csa01g02281 935 CDD HAD_TPP 592 823 - -
Csa01g02281 935 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 93 562 - -
Csa01g02281 935 Gene3D Glycogen Phosphorylase B; 341 543 - -
Csa01g02281 935 Gene3D Glycogen Phosphorylase B; 87 340 - -
Csa01g02281 935 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 48 926 - -
Csa01g02281 935 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 48 926 IPR001830 GO:0003824|GO:0005992
Csa01g02281 935 SUPERFAMILY HAD-like 617 919 IPR036412 -
Csa01g02281 935 CDD GT20_TPS 94 559 IPR001830 GO:0003824|GO:0005992
Csa01g02281 935 Pfam Glycosyltransferase family 20 94 559 IPR001830 GO:0003824|GO:0005992
Csa01g02281 935 Gene3D - 684 764 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02281 Csa-Chr1:19948842 Csa03g00151 Csa-Chr3:1167633 7.73E-146 dispersed
Csa04g02256 Csa-Chr4:23161353 Csa01g02281 Csa-Chr1:19948842 0 transposed
Csa01g02281 Csa-Chr1:19948842 Csa07g00478 Csa-Chr7:3465683 1.30E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02281 K16055 - csv:101213690 1855.11