Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02284 ATGAGTTGTTATGAGGAAGAAGATGAAGAATCAGGAGTAGTAGGATTAAGAAGATCATCATCATCATCAAGAACAGGAAGAGGAAAGATTGAAATAAAGAGAATTGAAAATACAACAAATCGTCAAGTTACTTTCTGTAAACGAAGAAATGGTTTGCTTAAGAAAGCTTATGAACTCTCTGTCCTTTGTGATGCTGAGGTTGCTCTTATCGTCTTCTCCTCCCGTGGTCGTCTCTATGAATACGCTAACAACAGTGTTAGGGCTACGATTTCGAGGTACAAAAAGGCATATTCGGATCCCTCCACCGCCATGACCGTTTCAGAAGCCAATACTCAGTTCTACCAGCAAGAATCTGCCAAATTACGAGCTCAAATCGGAAATTTGCAAAACCTAAACAGGCATTTGTTGGGGGAATCCATCAGTTCGTTATCAGTTAAAGATTTGAAAAGCCTAGAGGTGAAATTGGAGAAAGGAATTAGCCGAATTCGATCCAGAAAGAATGAGCTTCTGTTTTCGGAGATTGAATACATGCAAAAAAGGGAAATTGAACTGCACACTAACAACCAGCTGATACGTGCAAAGATAGCCGAGACAGAGAGAAGCCAACAAAACACAAATGCAAGTAATAACAATGGAATAGCAACAAGAAGAGGAGAGGAAGGATCAATGGGTACAAATTTAGAGGACAACAATCATCATCAATATGACTCAACAAACTACTTTGATCCCCATCATAATCACCCTATCTCTCTTCAACTTGTGTAA 765 39.35 MSCYEEEDEESGVVGLRRSSSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATISRYKKAYSDPSTAMTVSEANTQFYQQESAKLRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKGISRIRSRKNELLFSEIEYMQKREIELHTNNQLIRAKIAETERSQQNTNASNNNGIATRRGEEGSMGTNLEDNNHHQYDSTNYFDPHHNHPISLQLV* 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19982103 19989466 - CsaV3_1G032920.1 Csa01g02284 516781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02284 254 MobiDBLite consensus disorder prediction 198 254 - -
Csa01g02284 254 ProSiteProfiles MADS-box domain profile. 25 85 IPR002100 GO:0003677|GO:0046983
Csa01g02284 254 MobiDBLite consensus disorder prediction 224 254 - -
Csa01g02284 254 Pfam K-box region 108 195 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa01g02284 254 Gene3D - 37 133 IPR036879 GO:0003677|GO:0046983
Csa01g02284 254 PANTHER SERUM RESPONSE FACTOR HOMOLOG 25 243 - -
Csa01g02284 254 CDD MADS_MEF2_like 26 95 IPR033896 GO:0000977|GO:0045944
Csa01g02284 254 PRINTS MADS domain signature 27 47 IPR002100 GO:0003677|GO:0046983
Csa01g02284 254 PRINTS MADS domain signature 47 62 IPR002100 GO:0003677|GO:0046983
Csa01g02284 254 PRINTS MADS domain signature 62 83 IPR002100 GO:0003677|GO:0046983
Csa01g02284 254 ProSiteProfiles K-box domain profile. 111 201 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa01g02284 254 SMART madsneu2 25 84 IPR002100 GO:0003677|GO:0046983
Csa01g02284 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 34 81 IPR002100 GO:0003677|GO:0046983
Csa01g02284 254 MobiDBLite consensus disorder prediction 198 216 - -
Csa01g02284 254 PANTHER FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE 25 243 - -
Csa01g02284 254 ProSitePatterns MADS-box domain signature. 27 81 IPR002100 GO:0003677|GO:0046983
Csa01g02284 254 SUPERFAMILY SRF-like 26 99 IPR036879 GO:0003677|GO:0046983
Csa01g02284 254 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02284 Csa06g03736 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02284 Csa-Chr1:19982103 Csa05g03218 Csa-Chr5:31724175 3.32E-94 dispersed
Csa06g01379 Csa-Chr6:11768855 Csa01g02284 Csa-Chr1:19982103 2.77E-97 transposed
Csa01g02284 Csa-Chr1:19982103 Csa06g03736 Csa-Chr6:29814029 1.44E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30766 PF01486 K-box 4.50E-26 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02284 K09264 - csv:101205366 480.33