Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02286 ATGGAGACGAATAACAGTAACAACAACGGGGTGAGGTTTTTGTTAGGGAAGCAATCGTCGATGGCGCCGGATCGCCAGCCGGAGGAGGCGGAGTTGGCGGAAGACGGTGAGGAGATCGATCCAGGGGTGCGATTGATGTATTTGGCGAATGAAGGCGATTTGGAAGGGATTAAGGAGCTTTTAGATTCAGGAATTGATGTTAATTTTCACGATATTGATAATCGGACGGCGCTTCATATTGCTGCTTGTCAAGGCTGCAACGAGATCGTCGATTTACTGCTCCGCCGTGGCGCTGAAATTGACCCCAAAGATCGCTGGGGCAGTACGCCTCTTGCAGATGCTATATTCTACAAAAACCATGAAGTTATCAAATTGCTGGAAAAAAGGGGCGCAAAACATCTGATGGCTCCCATGCATGTCAAACATGCTCGTGAAGTCCCAGAATATGAAATTGATCCTAAAGAATTTGACTTCACAAACAGTGTCAACTTGACCAAGGGAACCTTCCATCTTGCATCATGGCGCGGAATCCAAGTTGCAGTCAAAGAGCTTCCTGAGGATGTGATTTCAGAGGAGGATAAAGTGAACGCCTTCAGAGATGAGCTTGCATTGCTTCAGAAGATTCGGCATCCTAACGTGGTTCAATTTCTTGGTGCCGTCACTCAAAGTAGTCCCATGATGATTGTCACTGAATATTTGCCTAAGGGAGATCTTTGTCAACTTTTACACAAAAAAGGACCACTAAAACCAATTGTAGCTGTGAAATTTGCCCTTGACATTGCTAGGGGAATGAACTATTTGCACGAAAATAAACCTGCACCGATCATCCACCGTGATCTTGAGCCATCAAATATATTGCGAGATGACACTGGGAACCTGAAAGTTGCAGACTTTGGAGTTAGCAAGTTGCTCACAGTCAAGGAGGATAAACCTTTAACATGTCAAGACACTGCTTGCCGATACGTCGCTCCAGAAGTTTTCAAAAATAATGGATACGACACCAAAGTAGACGTCTTCTCCTTTGCTTTAATTCTACAAGAGATGATCGAAGGACAACCACCATTTTCAAACAAAAAAGAAAATGCCATTTGTAAAGGGTATGCAGCCGGAATGCGCCCTCCTTTCAAAGCTCCAGCTAAATGCTACGCCCATGGAATTAAAGAGTTGATTGAAGCTTGCTGGGATGAGAGGCCATCAAAGAGACCAACTTTTAGACAGATAATCACAAGGTTGGAAACAATTCATCACAGTCTTAGCCATAGAAGGCGTTGGAAGCTCCCAACGTTGAGATGTTTTCAGGATCCTGATGCCAAGATAAGAAGAGACCATCTCTCCAGTAGCCGGAGCCTTTCATCGCGATCTGCAAGCAGCATATGA 1377 44.81 METNNSNNNGVRFLLGKQSSMAPDRQPEEAELAEDGEEIDPGVRLMYLANEGDLEGIKELLDSGIDVNFHDIDNRTALHIAACQGCNEIVDLLLRRGAEIDPKDRWGSTPLADAIFYKNHEVIKLLEKRGAKHLMAPMHVKHAREVPEYEIDPKEFDFTNSVNLTKGTFHLASWRGIQVAVKELPEDVISEEDKVNAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLCQLLHKKGPLKPIVAVKFALDIARGMNYLHENKPAPIIHRDLEPSNILRDDTGNLKVADFGVSKLLTVKEDKPLTCQDTACRYVAPEVFKNNGYDTKVDVFSFALILQEMIEGQPPFSNKKENAICKGYAAGMRPPFKAPAKCYAHGIKELIEACWDERPSKRPTFRQIITRLETIHHSLSHRRRWKLPTLRCFQDPDAKIRRDHLSSSRSLSSRSASSI* 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20011245 20015190 - CsaV3_1G032940.1 Csa01g02286 516783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02286 458 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 13 441 - -
Csa01g02286 458 Gene3D - 13 148 IPR036770 -
Csa01g02286 458 CDD STKc_MAP3K-like 167 411 - -
Csa01g02286 458 SMART ANK_2a 40 69 IPR002110 GO:0005515
Csa01g02286 458 SMART ANK_2a 106 135 IPR002110 GO:0005515
Csa01g02286 458 SMART ANK_2a 73 102 IPR002110 GO:0005515
Csa01g02286 458 Pfam Protein tyrosine and serine/threonine kinase 167 411 IPR001245 GO:0004672|GO:0006468
Csa01g02286 458 ProSiteProfiles Ankyrin repeat profile. 73 105 IPR002110 GO:0005515
Csa01g02286 458 PIRSF ILK 1 433 - -
Csa01g02286 458 MobiDBLite consensus disorder prediction 1 25 - -
Csa01g02286 458 MobiDBLite consensus disorder prediction 1 15 - -
Csa01g02286 458 ProSiteProfiles Protein kinase domain profile. 123 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02286 458 Gene3D Phosphorylase Kinase; domain 1 157 233 - -
Csa01g02286 458 Pfam Ankyrin repeats (3 copies) 45 132 IPR002110 GO:0005515
Csa01g02286 458 SUPERFAMILY Protein kinase-like (PK-like) 167 414 IPR011009 -
Csa01g02286 458 SUPERFAMILY Ankyrin repeat 44 133 IPR036770 -
Csa01g02286 458 Gene3D Transferase(Phosphotransferase) domain 1 234 442 - -
Csa01g02286 458 ProSiteProfiles Ankyrin repeat region circular profile. 73 105 - -
Csa01g02286 458 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 13 441 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02286 Csa06g03735 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02286 Csa-Chr1:20011245 Csa06g01376 Csa-Chr6:11696391 0 dispersed
Csa01g03031 Csa-Chr1:26424222 Csa01g02286 Csa-Chr1:20011245 3.28E-07 transposed
Csa05g01568 Csa-Chr5:18341060 Csa01g02286 Csa-Chr1:20011245 7.31E-13 transposed
Csa07g00501 Csa-Chr7:3598934 Csa01g02286 Csa-Chr1:20011245 7.04E-139 transposed
Csa01g02286 Csa-Chr1:20011245 Csa06g03735 Csa-Chr6:29804365 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77821 PF07714 PK_Tyr_Ser-Thr 1.60E-55 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02286 - - csv:101205123 902.894