Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02289 ATGATGGTGACCAAGAGCTTCTTTGTTCTCATTTTTCTTGTGGTGGATTGCTTCATGTTCTTCGGATTTGCAAATTCCAAGGTTCCCCAAGAAGAGGTTGATGTACTACAGCAAATTACGAGAACATTAGGTGCAGTTTATTGGAAATTCAATAGTGACTCCTGTGTTGTTGAGATGTTTGGGGTGGCAGAAAAATCTCCCAGGGGATCTGAGACTAACATTGATTGTGATTGCAGCATCGAGAATAGCACATTTTGTCATGTCGTAAGGATAGAATTAAAAAATCACAATCTGCCAGGTGTTCTTCCTCCTGAAATAGTCAAACTTCCTTACCTGAAAGAAGTTGATTTTGCTTACAATTACCTTCATGGTAACATACCTCGAGAATGGGCTTCAACACGGCTGACAACAATCTCTCTTCTTGTTAATCGGTTGACAGGGGAAATACCAGACGCATTGTGGAATATTACTACTCTAACATCACTGAACCTTGAAGGAAACCAATTTACTGGTGCAATACCATCACAACTTGGGAGGTTAAGCAACTTGCAATACTTGTTGCTATCATCTAATCAATTTAATGGCACAATACCGACAACATTTGCTGGTTTGAAAAACTTAACAGATTTCCGGATAAATGATAACAACCTAAATGGATCCATACCTGAGTTCATAAAGAATTGGATACTACTCAAGAGATTAGAACTGCATGCAAGTGGACTTCAGGGACCAATTCCTTCAAAAATATCCATTCTGAGGAACTTACAAGAATTAAGGATCAGTGATATTAATGGGCCAAAGCAGGATTTTCCTGAGTTGACAAACATGACGGGCATGGTTAGATTGGTTCTGAGAAATTGTAACATTGCTGGAAAGATCCCTTCATACGTGTGGAAGTTACCAGCCATGGAAATGCTGGACGTCAGCTTTAACCAGTTAACTGGGGAAATTCCAGAGGATATAAGCATGGAGCGCATTAGATTTCTCTTTTTAACTGGCAATATGCTGAGTGGCAACCTACCAGAGTCAATCTTGATGGATGGTACTAATGTCGATCTTTCATACAATAACTTGAAATGGCAAGGCCCTGGGCACCATGCTTGTAGAAAGAATTTGAATATGAATCTGAACTTGTTCCGAAGTTCTTCAAACAGCAACACCTTACAAGAAAATCTCCCCTGCTTAAAGGATTCCATCTGTTCAAAATATTCAAAATGTTGGTTCGTCAATTCTGGTGGGAATGACTTAACGATGGAGGTAAACAACAGAAACATTCTCTACAATGGGGATGCAGATATTGAAGGTGGGACAGCAAAATTCTACATTGATCAAGATAGCTACTGGGGATTGAGTAGCACTGGAGATTTTATGGATGATTTTGATCACCAAAATACACGCTACACTTTATCCCTGTCTTCATCAAATTTGTCCGAGCTGTATTCAACAGCACGTCGAAGTCCAATTACGCTCACTTATTTCCATCATTGCTTGGAAAATGGAAACTACTCAGTGACACTTCATTTTGCTGAGTTGCAATTTACAAATGATAAGACATATAAAAGCCTTGGAAGGCGGAAATTTGATATCTACATTCAGGATAGGTTGGTATTGGAGAATTTTGATATCGATGAGAAGGCGGGAGGAGCTCAAAAACCAACCGAAATGCAGTTTGCTTACATTAGTGTATTTAATCATGTCCTGGAGATCCGATTCTATTGGGCTGGAAAAGGGACAACGAGGATTCCTGAAAGAGGAGTTTATGGTCCACTTATATCAGCTATTTCTGTTTATTCTGATCTTAAATATTGTCCAATCCGTGAAAGTAGTAAAAAGAAAACTGTGGCGCTTGTCGTTGGCATTACCGTTGGATTGTTATGCCTTGCTACAATCATCATAGTGGGACTTCTTTGGTGGAAAGGCAGTCTTAAAGTAATCAGGCGCAGTAAAGGGGGTACAGATCTTGCAGGAATAGAAGTGCAAACTGGAATTTTTACCTTGAAGCAAATAAAAGCTGCCACCAATCATTTTGATTCTTGTAATAAAATTGGAGAAGGTGGTTTTGGCCCTGTTTATAAGGGTCAATTGGTTGATGGTACTATTGTAGCAATCAAGCAGCTTTCATCGAAATCAAGGCAGGGAAATCGTGAATTTCTGAATGAGATAGGAATGATCTCTTGCTTGCAACACCCAAATCTAGTCAAGCTCCATGGATGCTGTATTGAAGGGGACCAGTTGCTGTTGGTGTATGAATATTTGGAAAACAATAGTCTTGCCCGAGCACTATTTGGTCCGGATCACAGTCGGCTTAACCTAGATTGGCCAACTAGGCTTAGAATATGTATTGGTATAGCAAAAGGCTTAGCATATCTCCACGAGGAATCGAGCCTCAAAATTGTTCATAGAGACATCAAAGCTACTAATGTGCTACTGGATGGCGAACTGAATCCTAAAATATCTGATTTTGGTTTGGCTAAGCTCAACGATGAGGAGAAGACTCATATCACTACTAGAGTGGCTGGGACCATAGGATATATGGCTCCAGAATACGCACTTTGGGGTTATTTGACCTACAAAGCAGATGTTTACAGTTTTGGAGTTGTGGCCTTGGAGATTATCGGTGGAAGAAGCAACAATGATTATGTACCAAGTGAAACCTGTGTTTGCCTTCTAGACTGGGCCTGTCACTTGCAACAATTTGGGAACGTCATGGAGCTGGTAGATGAGAAGTTGAAGTCAGAAATTGACATGAAAGAAGCAGAAAACATGGTGAAAATAGCCCTTCTTTGCACCAATGCTTCACCATCAGTAAGGCCTGCAATGTCGGAAGTGGTGAACATGCTCGAAGGACGGATGAAAATTCCAGACCTGATCCCAGAACCGAGCAGTTACAATGAAGATCTGAGGTTCAAGGCAATGAGAGATATGCGTAGACAGCAACAGAGCCAAAGCCTTAGTGGAAGCCAAACCCAAAACTCCACAATGCAAACATGTGAGTCCTCCTCTACATCTGGAAATGAGTTCTATAATGTTAACCCAACGTCAAGATCATCAACAACTTGA 3060 40.56 MMVTKSFFVLIFLVVDCFMFFGFANSKVPQEEVDVLQQITRTLGAVYWKFNSDSCVVEMFGVAEKSPRGSETNIDCDCSIENSTFCHVVRIELKNHNLPGVLPPEIVKLPYLKEVDFAYNYLHGNIPREWASTRLTTISLLVNRLTGEIPDALWNITTLTSLNLEGNQFTGAIPSQLGRLSNLQYLLLSSNQFNGTIPTTFAGLKNLTDFRINDNNLNGSIPEFIKNWILLKRLELHASGLQGPIPSKISILRNLQELRISDINGPKQDFPELTNMTGMVRLVLRNCNIAGKIPSYVWKLPAMEMLDVSFNQLTGEIPEDISMERIRFLFLTGNMLSGNLPESILMDGTNVDLSYNNLKWQGPGHHACRKNLNMNLNLFRSSSNSNTLQENLPCLKDSICSKYSKCWFVNSGGNDLTMEVNNRNILYNGDADIEGGTAKFYIDQDSYWGLSSTGDFMDDFDHQNTRYTLSLSSSNLSELYSTARRSPITLTYFHHCLENGNYSVTLHFAELQFTNDKTYKSLGRRKFDIYIQDRLVLENFDIDEKAGGAQKPTEMQFAYISVFNHVLEIRFYWAGKGTTRIPERGVYGPLISAISVYSDLKYCPIRESSKKKTVALVVGITVGLLCLATIIIVGLLWWKGSLKVIRRSKGGTDLAGIEVQTGIFTLKQIKAATNHFDSCNKIGEGGFGPVYKGQLVDGTIVAIKQLSSKSRQGNREFLNEIGMISCLQHPNLVKLHGCCIEGDQLLLVYEYLENNSLARALFGPDHSRLNLDWPTRLRICIGIAKGLAYLHEESSLKIVHRDIKATNVLLDGELNPKISDFGLAKLNDEEKTHITTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIIGGRSNNDYVPSETCVCLLDWACHLQQFGNVMELVDEKLKSEIDMKEAENMVKIALLCTNASPSVRPAMSEVVNMLEGRMKIPDLIPEPSSYNEDLRFKAMRDMRRQQQSQSLSGSQTQNSTMQTCESSSTSGNEFYNVNPTSRSSTT* 1020
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20029642 20041330 - CsaV3_1G032970.1 Csa01g02289 516786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02289 1019 Coils Coil 902 922 - -
Csa01g02289 1019 Pfam Leucine rich repeat 158 217 IPR001611 GO:0005515
Csa01g02289 1019 SUPERFAMILY Protein kinase-like (PK-like) 660 978 IPR011009 -
Csa01g02289 1019 Gene3D Transferase(Phosphotransferase) domain 1 752 955 - -
Csa01g02289 1019 Gene3D Ribonuclease Inhibitor 48 198 IPR032675 -
Csa01g02289 1019 Gene3D Phosphorylase Kinase; domain 1 642 751 - -
Csa01g02289 1019 ProSitePatterns Serine/Threonine protein kinases active-site signature. 798 810 IPR008271 GO:0004672|GO:0006468
Csa01g02289 1019 Gene3D - 405 600 - -
Csa01g02289 1019 Pfam Protein tyrosine and serine/threonine kinase 680 947 IPR001245 GO:0004672|GO:0006468
Csa01g02289 1019 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 74 998 - -
Csa01g02289 1019 SMART serkin_6 676 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02289 1019 MobiDBLite consensus disorder prediction 973 1019 - -
Csa01g02289 1019 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 74 998 - -
Csa01g02289 1019 Gene3D Ribonuclease Inhibitor 199 266 IPR032675 -
Csa01g02289 1019 Pfam Malectin domain 406 594 IPR021720 -
Csa01g02289 1019 ProSiteProfiles Protein kinase domain profile. 676 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02289 1019 SUPERFAMILY L domain-like 80 338 - -
Csa01g02289 1019 CDD STKc_IRAK 682 949 - -
Csa01g02289 1019 MobiDBLite consensus disorder prediction 976 1019 - -
Csa01g02289 1019 Gene3D Ribonuclease Inhibitor 267 392 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02289 Csa-Chr1:20029642 Csa04g02262 Csa-Chr4:23235696 0 dispersed
Csa03g01914 Csa-Chr3:14845713 Csa01g02289 Csa-Chr1:20029642 1.28E-77 dispersed
Csa01g02289 Csa-Chr1:20029642 Csa04g02258 Csa-Chr4:23201564 1.43E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77822 PF07714 PK_Tyr_Ser-Thr 3.10E-48 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02289 - - csv:101204874 2007.26