Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02293 ATGACTTCCGGTACCAGAATGCCCACTTGGAAGGAAAGGGAAAACAACAAGCGTCGTGAGAGGCGTCGTCGTGCCATCGCTGCTAAGATCTTTCTTGGCTTGCGAATGTATGGAAACTACAAGCTTCCTAAGCACTGCGACAATAATGAAGTCCTTAAAGCCCTCTGTGATGAAGCTGGATGGACTGTCGAAGAAGACGGCACTACCTATCGGAAGGGTTGCAAGCCTGTGGAACGCAATATCATGGGTGGGTCAGCTTCTGCAAGTCCATGTTCATCTTATCAGCCGAGCCCACGTGCATCTTATAACCCAAGTCCTGCGTCTTCTTCCTTCCCAAGCCCCAAATCTTCGCGTTACGCCATGAATGGCAATGACAATGGTACTGATCCCAATTCCCTCATCCCATGGCTGAAGAACCTCTCCTCGGGTTCATCATCAGCTTCCTCCAGGCTGCCTCACCATCTTTTTATTAATTGTGGCTCCATAAGTGCACCCGTCACCCCTCCATCAAGTTCCCCAACTGCTCGAACACCCAGAAAACCAAATGATTGGGACAATCATCCAGCAGTTGCTCCTGCTTGGGCTGCACAGCGCTTCTCATGTTTGCCAACATCGACCCCACAAAGCCCTGGGCGTCAGGTGTTGGCTGATCCAGCATGGCTTGATAGTATACGGATTCCTCAAAGTGGACCATCATCTCCAACCTTCAGCCTTGTGGCAAGAAATCCTTTCGGATTTAAGGAGGCAATGTCTGCTGGAGTGTCTCGTAATTGGACTCCTACACAGAGCGGAACATGCTCGCCCACAGTTGCTGCAGGCATTGATCATACTTCAGACGTTCCTATGACAGATGGAACTGCAACGGACTTTGCCTTCGGAAGTTGTTCAATTGGGTTGGTGAAGCCTTGGGAAGGAGAGAGAATTCACGAGGAATGCATCTCTGATGATCTTGAACTTACACTTGGGAATTCAAGTACAAGGTAA 984 49.59 MTSGTRMPTWKERENNKRRERRRRAIAAKIFLGLRMYGNYKLPKHCDNNEVLKALCDEAGWTVEEDGTTYRKGCKPVERNIMGGSASASPCSSYQPSPRASYNPSPASSSFPSPKSSRYAMNGNDNGTDPNSLIPWLKNLSSGSSSASSRLPHHLFINCGSISAPVTPPSSSPTARTPRKPNDWDNHPAVAPAWAAQRFSCLPTSTPQSPGRQVLADPAWLDSIRIPQSGPSSPTFSLVARNPFGFKEAMSAGVSRNWTPTQSGTCSPTVAAGIDHTSDVPMTDGTATDFAFGSCSIGLVKPWEGERIHEECISDDLELTLGNSSTR* 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20054584 20057911 - CsaV3_1G033010.1 Csa01g02293 516790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02293 327 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 327 IPR033264 GO:0003700|GO:0006351|GO:0009742
Csa01g02293 327 MobiDBLite consensus disorder prediction 1 21 - -
Csa01g02293 327 MobiDBLite consensus disorder prediction 79 127 - -
Csa01g02293 327 MobiDBLite consensus disorder prediction 165 187 - -
Csa01g02293 327 MobiDBLite consensus disorder prediction 85 127 - -
Csa01g02293 327 Pfam BES1/BZR1 plant transcription factor, N-terminal 3 141 IPR008540 -
Csa01g02293 327 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 1 327 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02293 Csa-Chr1:20054584 Csa04g00815 Csa-Chr4:5720049 2.22E-127 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30767 PF05687 BES1_N 1.40E-66 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02293 - - csv:101204637 596.275