Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g02293 | ATGACTTCCGGTACCAGAATGCCCACTTGGAAGGAAAGGGAAAACAACAAGCGTCGTGAGAGGCGTCGTCGTGCCATCGCTGCTAAGATCTTTCTTGGCTTGCGAATGTATGGAAACTACAAGCTTCCTAAGCACTGCGACAATAATGAAGTCCTTAAAGCCCTCTGTGATGAAGCTGGATGGACTGTCGAAGAAGACGGCACTACCTATCGGAAGGGTTGCAAGCCTGTGGAACGCAATATCATGGGTGGGTCAGCTTCTGCAAGTCCATGTTCATCTTATCAGCCGAGCCCACGTGCATCTTATAACCCAAGTCCTGCGTCTTCTTCCTTCCCAAGCCCCAAATCTTCGCGTTACGCCATGAATGGCAATGACAATGGTACTGATCCCAATTCCCTCATCCCATGGCTGAAGAACCTCTCCTCGGGTTCATCATCAGCTTCCTCCAGGCTGCCTCACCATCTTTTTATTAATTGTGGCTCCATAAGTGCACCCGTCACCCCTCCATCAAGTTCCCCAACTGCTCGAACACCCAGAAAACCAAATGATTGGGACAATCATCCAGCAGTTGCTCCTGCTTGGGCTGCACAGCGCTTCTCATGTTTGCCAACATCGACCCCACAAAGCCCTGGGCGTCAGGTGTTGGCTGATCCAGCATGGCTTGATAGTATACGGATTCCTCAAAGTGGACCATCATCTCCAACCTTCAGCCTTGTGGCAAGAAATCCTTTCGGATTTAAGGAGGCAATGTCTGCTGGAGTGTCTCGTAATTGGACTCCTACACAGAGCGGAACATGCTCGCCCACAGTTGCTGCAGGCATTGATCATACTTCAGACGTTCCTATGACAGATGGAACTGCAACGGACTTTGCCTTCGGAAGTTGTTCAATTGGGTTGGTGAAGCCTTGGGAAGGAGAGAGAATTCACGAGGAATGCATCTCTGATGATCTTGAACTTACACTTGGGAATTCAAGTACAAGGTAA | 984 | 49.59 | MTSGTRMPTWKERENNKRRERRRRAIAAKIFLGLRMYGNYKLPKHCDNNEVLKALCDEAGWTVEEDGTTYRKGCKPVERNIMGGSASASPCSSYQPSPRASYNPSPASSSFPSPKSSRYAMNGNDNGTDPNSLIPWLKNLSSGSSSASSRLPHHLFINCGSISAPVTPPSSSPTARTPRKPNDWDNHPAVAPAWAAQRFSCLPTSTPQSPGRQVLADPAWLDSIRIPQSGPSSPTFSLVARNPFGFKEAMSAGVSRNWTPTQSGTCSPTVAAGIDHTSDVPMTDGTATDFAFGSCSIGLVKPWEGERIHEECISDDLELTLGNSSTR* | 328 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 20054584 | 20057911 | - | CsaV3_1G033010.1 | Csa01g02293 | 516790 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g02293 | 327 | PANTHER | BES1/BZR1 HOMOLOG PROTEIN 3-RELATED | 1 | 327 | IPR033264 | GO:0003700|GO:0006351|GO:0009742 | |
Csa01g02293 | 327 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Csa01g02293 | 327 | MobiDBLite | consensus disorder prediction | 79 | 127 | - | - | |
Csa01g02293 | 327 | MobiDBLite | consensus disorder prediction | 165 | 187 | - | - | |
Csa01g02293 | 327 | MobiDBLite | consensus disorder prediction | 85 | 127 | - | - | |
Csa01g02293 | 327 | Pfam | BES1/BZR1 plant transcription factor, N-terminal | 3 | 141 | IPR008540 | - | |
Csa01g02293 | 327 | PANTHER | BES1/BZR1 HOMOLOG PROTEIN 4 | 1 | 327 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02293 | Csa-Chr1:20054584 | Csa04g00815 | Csa-Chr4:5720049 | 2.22E-127 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30767 | PF05687 | BES1_N | 1.40E-66 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g02293 | - | - | csv:101204637 | 596.275 |