Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02298 ATGGCTGCCGCTGCGATTTTTTCGTCTTTACGAAGGAGGAGATCGCCGTCTTTGGAGGCTTTTTTGGCCCCCGTTGACCTATCCGATGTGGCTTTAGTTCAAACCTTGACGATAGTGGCGACGGAGCTTGTTTCTCGATTTTCAGACAAGTCTTTCTTCTTCCAGCGTAGGAATTCGCGTTCTCTTATAAGAAAATTGGAGGTTTGTCTAGTCTTTTTGGAGTTTTTGAAGGAAACTGACGCCAATTTGCCTCACACCGCTTTACTCTGTTTGAAGGAGCTTTATTTGTTGTTGTATCGGTCTAAGATACTTCTTGATTATTGCTCTGAATCTAGTAAGTTGTGGTTGTTACTTCAGAACCACTCGATTTCGGGGCATTTCAATGATTTGAATTTGGAGTTGTTGACATTTTTTGATGTTTTTCCTATTGAGGAAGTTGAATTGGGGGCGGATGTTAGAGAGCAGGTTGAGCTTTTGCAGAAGCAGTTGAGAAGGACTAGACTGTTTGTTGATGAACGTGATGAGGTTTTGAGGACTCGTTTCCTTTCTTTTCTTGATGAGTTTGAGAACGGGAGGCTTCCCAATCCTAGGGAAATGAGGGAGTTTTTTGTGGATAAGTTGAAGATTTGGAATGCGAAGAGTTGTAGAGCTGAAATTGAGTTCTTGGAGGAGCAGATTGTCAATCATGAGGGTGATATTGAGCCCACGGTGGCGGTGTTGAACGGTTTTGTTGCTCTTACTAGATATAGTAGGTTTTTCCTCTTTGGATTTGAGGAAGATGATGTTGATTCAGGCACATCAAATCAGAAAAAGCTAAAGAAGAACTTGATTACTCAGGAGATTGCTGAGACGTTTCTAACAATTCCGAGGGACTTCTGCTGCCCAATATCACTGGATTTGATGAAAGATCCTGTGACCATTTCTACAGGTCAGACATACGATCGCAGCTCGATTACTAGATGGATGGAAGAAGGGCACAACACTTGTCCAAAGACGGGGCAAATGCTTATTCATACCCGCCTCGCTCCCAACCGCGCATTAAGGAATTTGATTGTGCAGTGGTGCATTGCACATGGAGTTCCTTATGATCCACCAGATGGGATGGATGCATCTTCAGAGAGCTATGCAATTGCTTCTCCCACACGAGCTGCACTAGAAGCCAATAGAGCAACAGCTATGATCCTTATTCAACAGTTATCCATCGGATCACAAGATGCAAAGACGATTGCTGCTCGTGAGATTCGTTTGTTAGCCAAAACAGGGAAAGAGAACCGTGCTTTCATTGCAGAAGCCGGTGCCATCCCCCATCTTCAAAAGTTGCTGGCTTCCCCAAACGCAGTTGCACAGGAGAATTCTGTAACTGCTATGCTTAACCTCTCCATATATGACAAGAACAAAAGTTTGATAATGAGTGAGGTAGGGTGTTTAGGAGCAATAACCGATGTGTTAAGATTTGGACACAGTACAGAAGCACGGGAAAACGCCGCAGCTACGTTATTCAGCCTGTCTGCAGTTCATGACTACAAGAAGAGAATAGCAGAAGAAGGTGGTGCAGTTGAAGCCTTGGCAGGGTTGTTGAGAGATGGTACCCCAAGAGGAAAGAAGGATGCTGTAACAGCTTTATTTAATCTCTCAACCCACACGGATAATTGTGTTCAGATGATAGAGGCCGGGGCAGTAACAGCTCTTGTAGGAGCATTGGGGAATGAAGGTGTTGCTGAGGAAGCAGCCGGTGCATTGGCTTTGATTGTTAGACAGCCCGTTGGGGCCGAAGCAGTTGCCAAACAGGAGAGAGCTGTAGCAGGATTGATAGCAATGATGCGATGTGGTACGCCGAGAGGTAAAGAGAATGCAGTAGCAGCTTTGCTCGAGTTATGCCGAAGTGGTGGAGCTGCCACAACCGAACAAGTGTTCAAGGCTCCGGCTTTGGCTGGCTTGCTCCAAACACTCCTATTCACCGGTACAAAGCGAGCGCGAAGAAAGGCTGCTTCACTAGCTAGAGTGTTCCAAAGATGTGAGCATGTCACAATGCATTACGGCGGATTAGGGGTTGGTTATGCCTATGCAAGTAACTCAGCTTCAAACAGAGAAACAAACTTCGCTAGCGAGGTGTCTGTGCCAATATCTATCTCGGTACCTGTCGTATAA 2148 45.44 MAAAAIFSSLRRRRSPSLEAFLAPVDLSDVALVQTLTIVATELVSRFSDKSFFFQRRNSRSLIRKLEVCLVFLEFLKETDANLPHTALLCLKELYLLLYRSKILLDYCSESSKLWLLLQNHSISGHFNDLNLELLTFFDVFPIEEVELGADVREQVELLQKQLRRTRLFVDERDEVLRTRFLSFLDEFENGRLPNPREMREFFVDKLKIWNAKSCRAEIEFLEEQIVNHEGDIEPTVAVLNGFVALTRYSRFFLFGFEEDDVDSGTSNQKKLKKNLITQEIAETFLTIPRDFCCPISLDLMKDPVTISTGQTYDRSSITRWMEEGHNTCPKTGQMLIHTRLAPNRALRNLIVQWCIAHGVPYDPPDGMDASSESYAIASPTRAALEANRATAMILIQQLSIGSQDAKTIAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLASPNAVAQENSVTAMLNLSIYDKNKSLIMSEVGCLGAITDVLRFGHSTEARENAAATLFSLSAVHDYKKRIAEEGGAVEALAGLLRDGTPRGKKDAVTALFNLSTHTDNCVQMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPVGAEAVAKQERAVAGLIAMMRCGTPRGKENAVAALLELCRSGGAATTEQVFKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCEHVTMHYGGLGVGYAYASNSASNRETNFASEVSVPISISVPVV* 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20078884 20082385 - CsaV3_1G033060.1 Csa01g02298 516795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02298 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Csa01g02298 715 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Csa01g02298 715 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 11 692 - -
Csa01g02298 715 Gene3D - 376 513 IPR011989 -
Csa01g02298 715 Gene3D - 514 667 IPR011989 -
Csa01g02298 715 SUPERFAMILY RING/U-box 277 362 - -
Csa01g02298 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Csa01g02298 715 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515
Csa01g02298 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Csa01g02298 715 PANTHER U BOX DOMAIN-CONTAINING 11 692 - -
Csa01g02298 715 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Csa01g02298 715 Coils Coil 212 232 - -
Csa01g02298 715 CDD RING-Ubox_PUB 292 334 IPR045210 -
Csa01g02298 715 SMART arm_5 421 461 IPR000225 GO:0005515
Csa01g02298 715 SMART arm_5 587 627 IPR000225 GO:0005515
Csa01g02298 715 SMART arm_5 506 546 IPR000225 GO:0005515
Csa01g02298 715 SMART arm_5 463 504 IPR000225 GO:0005515
Csa01g02298 715 SMART arm_5 547 585 IPR000225 GO:0005515
Csa01g02298 715 SUPERFAMILY ARM repeat 394 669 IPR016024 -
Csa01g02298 715 Pfam U-box domain 288 358 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02298 Csa-Chr1:20078884 Csa04g01681 Csa-Chr4:16225365 5.00E-137 dispersed
Csa01g02298 Csa-Chr1:20078884 Csa01g00838 Csa-Chr1:5256821 3.25E-107 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02298 - - csv:101204151 1308.12