Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02303 ATGGATGATGTTTCCTTCAACCATAATAACCACCACCAATTCTATTCATCTGATCCATTCGAAGATTCCGACGAATTAAAACCCACCCCCGACTCTCCTCCTCCTACTTCCACCATCGCCGCTGCCGCCACCACCAAAAAGGGCAGAAGAGGAATGAAGAAGAAAATTGTATCAGTGAAAATTAACGGCGACAGCCCAAGAAATTCCTCCGGTTCCGCAACTCCACCTTCAGATTCATGGGCTTGGAGAAAGTATGGTCAAAAACCCATCAAAGGCTCCCCTTATCCGAGGGCGTATTATAGGTGTAGTAGTTCAAAGGGATGTCCAGCGAGGAAGCAAGTAGAGAGGAATCGGCTTGATCCAACCACGTTGGTCATTACATATTCGTGTGAGCATAATCATTCCGGTCCGGTTTCTAGAAATAACAACAACAACAATAATCAGAATAACCAAATCGTTGTGATGAAACCCGGTTCACCAGAGACGGTTGCGGTTCATCAAGAACCCGAAGTGGAAGAGAAATTTGTGGAGATTGGGGGGGGAGAAGAGTCGTTGATAACGGCGGATGAGTTTAGTTGGTTTGGGGAAATGGAAACGACGTCGTCTACGGTACTCGAAAGCTCCATTTTTTCCGGCAGAGCGTCCACTGGATTGGTGGATCATTCAATTTCTAGTGACGTGGCAATGCTTTTTCCAATGGGGGATGATGACGTGGATGAGTCACTCTTTGCGGATCTAGGGGAGTTGCCGGAGTGTTCACTCGTGTTCCGGCGCGGCGGAGGTCGTGGATTACCGGTGGATGAACAACCGGCGGCAGCCCAGCGGCGGATCACGCCTTGGTGTGGGACAACCACATGA 858 49.18 MDDVSFNHNNHHQFYSSDPFEDSDELKPTPDSPPPTSTIAAAATTKKGRRGMKKKIVSVKINGDSPRNSSGSATPPSDSWAWRKYGQKPIKGSPYPRAYYRCSSSKGCPARKQVERNRLDPTTLVITYSCEHNHSGPVSRNNNNNNNQNNQIVVMKPGSPETVAVHQEPEVEEKFVEIGGGEESLITADEFSWFGEMETTSSTVLESSIFSGRASTGLVDHSISSDVAMLFPMGDDDVDESLFADLGELPECSLVFRRGGGRGLPVDEQPAAAQRRITPWCGTTT* 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20150144 20151996 - CsaV3_1G033110.1 Csa01g02303 516800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02303 285 MobiDBLite consensus disorder prediction 62 77 - -
Csa01g02303 285 SMART WRKY_cls 76 136 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa01g02303 285 MobiDBLite consensus disorder prediction 1 84 - -
Csa01g02303 285 ProSiteProfiles WRKY domain profile. 77 137 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa01g02303 285 Gene3D WRKY domain 64 138 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa01g02303 285 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 28 283 IPR044810 GO:0003700
Csa01g02303 285 Pfam WRKY DNA -binding domain 78 134 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa01g02303 285 SUPERFAMILY WRKY DNA-binding domain 73 136 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa01g02303 285 PANTHER OS01G0750100 PROTEIN 28 283 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02303 Csa-Chr1:20150144 Csa01g02661 Csa-Chr1:23633542 1.23E-33 dispersed
Csa01g02303 Csa-Chr1:20150144 Csa07g00476 Csa-Chr7:3456072 4.39E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30769 PF03106 WRKY 2.00E-24 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02303 - - csv:101203902 545.043